Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0258 ATGAATCCCATGCCCAACTTCCCTGTTACGGTTTTCTTCCTTTGTGTCCTTTCTTTGCTCTTTTCAGCTTCCGCCTCAGCATCTGAGCTCCGAGCTTTACTCGAATTCAAGAAAGGGATTCAAACAGATCCGCTTGGTAGAGTTTTTGACTCATGGAAGCAGTCTTCAGTTACAGACGCCAACAACTGCCCTCGCTCTTGGACTGGTGTTTTCTGCGACGCTGAAACCGGCAATGTCACTGCCATAGTTCTCGATAGGCTTCGCTTGGGAGGGGAATTGAAGTTTCACACTCTGCTTGAACTCAAAATGTTGAGAAATCTCAGCCTTTCAGGAAATGATTTCACTGGTCGGCTACCCCCGGCATTGGGGACGTTGACTACTTTGCAGCATTTGGATCTTTCTGACAACAAGTTCTACGGGCCGATCCCGGCCCGGATCAATGAGCTTTGGGGATTAAATTACCTGAATTTGTCCATTAATAACTTCAAGGGTGGGTTTCCTGGTGGGATCAGTAATCTTCAGCAGCTGAGAGTGCTGGATTTGCATTTCAATGAACTATGGGGTGATATTGGTGATGTCCTGTCGGCATTGCGGAATGTGGAGCATCTTGATTTGAGCTACAATAAGTTCTTCGGGGGGCTCTCGCTTGCCGTGGAGAATGTTTCGGGCTTGGCGAATACGGCTCATTTCATAAATTTGAGTCATAATAGATTAAATGGTCGGTTCTTTGAGGGTGATTCAATTGCGTTGTTTCGTAACTTAGAAGTATTGGATTTGGGTAATAATCAGATCACCGGGGAGCTTCCATCGTTTGGGTCATCACCGGTTCTTCGAGTCTTGCGACTTGGGAATAATCTATTATATGGGTCAATACCGGATGAATTGTTAGAAAGTTCTATGTCATTGGAAGAATTGGATCTTAGCAGCAATAGATTTACGGGCTCAATTCTTGTAATCAACTCTACAACTTTGAATATTTTGAATCTCTCATCAAATGGTTTATCGGCCTCTTTGCCAACATCTTTGAGAAGATGTACAGTCATGGACTTGAGTAGGAATATGCTATCTGGTGACATATCTATTATGCAGAACTGGGAAGCCACATTGAAGGTTCTTGATCTCAGTTCAAACAAGCTGTCAGGAAGCTTTCCAAATTTGACAAGTCAGTTTGAGGGATTAACCACACTTATTCTCAGGAATAATTCGTTAGTTGGATCCATGCCTCCATTGTTGGGGACCTATTCTAAATTGTCTATGGTTGACTTCAGTTTAAATGAACTTAGTGGGTCCATTCCTGGTAATTTATTTATGTCAACGACATTAACAAGCCTGAATCTTTCTAGAAATCAATTTACAGGGTCACTTCTGCTTCAAGGTTCAGGAGCAAGTGAATTATTACTTATGTCTCCCTATAGGCCAATGGAATATCTTGATGCATCAGATAACTCCTTATCAGGTGTCTTGCCTTCTAATATAGGTATGATGGGTGGGCTTAAACTGTTGAATCTTGCCAGGAATGGCTTTTCAGGACAGCTGCCAGATGAATTAAGCAAATTTACTAATTTGGAGTACCTTGATTTGTCTAGCAACAAATTTACAGGAAAAATTCCTGGTAAACTTTCCTCCAGTATAAATGTATTTAATGTATCCAATAATGATCTATCTGGTCGTGTTCCAGAGAATTTGAGGAGGTTCCCTCCCTCATCCTTTCACCCTGGAAATGAAAAGCTAATCCTACCAAATAATTTGCCCGGAACTACTTCGGTGCCTGATAATTTTCCTGATCAAGGGAAACATCGTAGTTCAAAGGGTAATATCAGGATAGCAATTATTCTTGCTTCAGTGGGTGCTGCTGTGATGATTGTTTTTGTTTTATTGGCTTATCGTCGAGCACAACTTCAAGAATTTTATGGAAGAGGTGAGTTTAGTGATCAAAATACTGAAAGAGATGTTAAGTTAGGAAGGTTTACACGGCCTTCCCTTTTCAAGTTCCATACAAATGTTCAGCCGCCGCCAACTTCATTGAGCTTTTCAAATGATCATTTACTGACTTCCAATTCAAGGTCACTCTCTGGACAGTCGGAGTTTATGACGGAAATTGCTGATCATAGCTCATCTCAGGGGATTGTAGCAGCTAGTTCAGCATCTGTAAATCCTAATCTCCTGGATAACCCTGCAACATCATCTGGAAGGAATTCATCTCCTGGTTCTCCGTTACCTTCCTCACCCCCTTTTATAGAGGAAAGTGAAAAGCCAGTGATGTTGGCTGTGTACTCACCAGATCGGCTGGCTGGAGAATTGTTCTTCCTTGATTCATCCCTGGCATTCACTGCGGAGGAATTATCTCGAGCTCCAGCTGAAGTTCTTGGCAGAAGTAGCCATGGCACTTTATACAAAGCTACTCTAGACAGTGGTGATATGCTGACTGTAAAGTGGTTGCGGGTGGGATTGGTCAAACATAAGAAGGAATTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCAAATATTCTTCCATTACGGGCATACTACTGGGGGCCTAGGGAACAAGAGAGGCTTCTTTTAGCTGACTATATACTTGGGGACAGCTTGGCCCTACATCTTTATGAGACCACACCCCGGAGGTACTCACCTTTATCATTCAGCCAGAGAATAAGAGTTGCCGTTGACGTTGCTCGAGGTCTTTTATACCTTCATGATCGAGGGCTTCCTCATGGAAATCTAAAACCAACAAATATATTATTGGAAGGACCTGATTACAGTGGACGTCTGACTGACCATGGTCTGCACCGCCTTATGAGGCCACCTGGAATTGCAGAGCAGATATTAAATCTAGGAGCGCTAGGATACCGTGCTCCAGAACTTGCTACTTCAACTAAACCAGTTCCATCTTTTAAGGCAGATGTCTATGCACTTGGTGTGATCCTAATGGAAATATTAACCAGAAAGAGTGCAGGTGACATAATATCGGGTCAGTCTGGGGCTGTTGATCTTACAGATTGGGTTAGGCTATGTGAGCAAGAAGGACGGATAGCGGACTGTATTGACAGAGACATTACAGGAGGGGAAGAATCCTCCAAAGAGATGGACGAATTGCTAGCAATATCTCTCAGGTGTATTCTCCCTGTAAATGAGAGGCCTAACATCAGACAAGTTTTTGATGATCTTTGTTCTATATTGGTTTGA 3192 0.427 MNPMPNFPVTVFFLCVLSLLFSASASASELRALLEFKKGIQTDPLGRVFDSWKQSSVTDANNCPRSWTGVFCDAETGNVTAIVLDRLRLGGELKFHTLLELKMLRNLSLSGNDFTGRLPPALGTLTTLQHLDLSDNKFYGPIPARINELWGLNYLNLSINNFKGGFPGGISNLQQLRVLDLHFNELWGDIGDVLSALRNVEHLDLSYNKFFGGLSLAVENVSGLANTAHFINLSHNRLNGRFFEGDSIALFRNLEVLDLGNNQITGELPSFGSSPVLRVLRLGNNLLYGSIPDELLESSMSLEELDLSSNRFTGSILVINSTTLNILNLSSNGLSASLPTSLRRCTVMDLSRNMLSGDISIMQNWEATLKVLDLSSNKLSGSFPNLTSQFEGLTTLILRNNSLVGSMPPLLGTYSKLSMVDFSLNELSGSIPGNLFMSTTLTSLNLSRNQFTGSLLLQGSGASELLLMSPYRPMEYLDASDNSLSGVLPSNIGMMGGLKLLNLARNGFSGQLPDELSKFTNLEYLDLSSNKFTGKIPGKLSSSINVFNVSNNDLSGRVPENLRRFPPSSFHPGNEKLILPNNLPGTTSVPDNFPDQGKHRSSKGNIRIAIILASVGAAVMIVFVLLAYRRAQLQEFYGRGEFSDQNTERDVKLGRFTRPSLFKFHTNVQPPPTSLSFSNDHLLTSNSRSLSGQSEFMTEIADHSSSQGIVAASSASVNPNLLDNPATSSGRNSSPGSPLPSSPPFIEESEKPVMLAVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGDMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNILPLRAYYWGPREQERLLLADYILGDSLALHLYETTPRRYSPLSFSQRIRVAVDVARGLLYLHDRGLPHGNLKPTNILLEGPDYSGRLTDHGLHRLMRPPGIAEQILNLGALGYRAPELATSTKPVPSFKADVYALGVILMEILTRKSAGDIISGQSGAVDLTDWVRLCEQEGRIADCIDRDITGGEESSKEMDELLAISLRCILPVNERPNIRQVFDDLCSILV 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0258 1063 Gene3D Ribonuclease Inhibitor 26 215 IPR032675 -
Glsi02g0258 1063 Pfam Leucine Rich repeat 438 453 IPR001611 GO:0005515
Glsi02g0258 1063 Pfam Leucine Rich repeat 299 315 IPR001611 GO:0005515
Glsi02g0258 1063 Pfam Leucine Rich repeat 252 267 IPR001611 GO:0005515
Glsi02g0258 1063 Pfam Leucine Rich repeat 520 535 IPR001611 GO:0005515
Glsi02g0258 1063 ProSiteProfiles Leucine-rich repeat profile. 521 543 IPR001611 GO:0005515
Glsi02g0258 1063 ProSiteProfiles Protein kinase domain profile. 783 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0258 1063 ProSiteProfiles Leucine-rich repeat profile. 368 390 IPR001611 GO:0005515
Glsi02g0258 1063 FunFam Nuclear pore complex protein NUP107 26 192 - -
Glsi02g0258 1063 FunFam Leucine-rich repeat receptor-like protein kinase 768 860 - -
Glsi02g0258 1063 FunFam Pollen receptor-like kinase 1 861 1063 - -
Glsi02g0258 1063 SUPERFAMILY Protein kinase-like (PK-like) 786 1058 IPR011009 -
Glsi02g0258 1063 Pfam Leucine rich repeat N-terminal domain 27 73 IPR013210 -
Glsi02g0258 1063 FunFam Leucine-rich repeat receptor protein kinase EMS1 467 564 - -
Glsi02g0258 1063 PANTHER OS07G0626500 PROTEIN 12 104 - -
Glsi02g0258 1063 MobiDBLite consensus disorder prediction 720 736 - -
Glsi02g0258 1063 Pfam Protein kinase domain 787 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0258 1063 SUPERFAMILY L domain-like 54 359 - -
Glsi02g0258 1063 MobiDBLite consensus disorder prediction 720 746 - -
Glsi02g0258 1063 Gene3D Phosphorylase Kinase; domain 1 763 860 - -
Glsi02g0258 1063 SMART LRR_typ_2 275 298 IPR003591 -
Glsi02g0258 1063 SMART LRR_typ_2 173 197 IPR003591 -
Glsi02g0258 1063 SMART LRR_typ_2 101 125 IPR003591 -
Glsi02g0258 1063 SMART LRR_typ_2 519 543 IPR003591 -
Glsi02g0258 1063 SMART LRR_typ_2 251 273 IPR003591 -
Glsi02g0258 1063 SMART LRR_sd22_2 125 151 - -
Glsi02g0258 1063 SMART LRR_sd22_2 173 202 - -
Glsi02g0258 1063 SMART LRR_sd22_2 366 395 - -
Glsi02g0258 1063 SMART LRR_sd22_2 251 266 - -
Glsi02g0258 1063 SMART LRR_sd22_2 519 546 - -
Glsi02g0258 1063 Pfam Leucine rich repeat 152 210 IPR001611 GO:0005515
Glsi02g0258 1063 ProSiteProfiles Leucine-rich repeat profile. 253 275 IPR001611 GO:0005515
Glsi02g0258 1063 Gene3D Transferase(Phosphotransferase) domain 1 863 1063 - -
Glsi02g0258 1063 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 243 466 - -
Glsi02g0258 1063 SUPERFAMILY L domain-like 246 556 - -
Glsi02g0258 1063 Gene3D Ribonuclease Inhibitor 229 586 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0258 Glsi-ChrGlsi02 1645761 1652148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0258 11 562 Receptor kinase-like Gene Family AT5G46330 33.793 2.07e-60 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi02g0258 Pkinase 1.9e-27 CL0016