Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0253 ATGAATTCTCCATCCACACAGTTTGTTTCCTCAAGAAGGATGGGTGTATATGATCCAATCCACCAGATTAGTATGTGGGGAGAAAATTTCAAAAGTAATGGCAATTTAAGTGCCTTAATTGGTGAGGCAGATGTGAAGTTAGGTAATCAGCCAGAGGATGCTTCTCATGGAACACTGGGAACGTCTAAGAAGTATGCCCAAGAAGCTAATAAACCTTTTGATAAGACACAGAGACGTCTTGCACAAAATCGGGAGGCTGCTCGGAAGAGTCGTCTACGGAAAAAGGCCTATGTGCAGCAATTAGAATCAAGTCGCTTGAAGTTGATGCAGTTAGAGCAAGAGCTTGATCATGCAAGACAACAGGGTTTATATATGGGTGGTGGACTGGATTCTAATCATCTGGGTTTTGCTGGATCTGTAAATTCAGGTATTACAACCTTTGAGATGGAGTATGGACACTGGATAGAAGAGCAAAATCGACAAATCTGTGAACTGAGAGGTGCTTTAAACGCTCATATTGGTGATATGGAGCTCAGGATACTTGTAGATGGTATAATGAATCACTATTTTGAACTCTATCGCATGAAATCAGCTGCTGCAAAAGCAGATGTTTTCTATATGATGTTTGGTATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCCGAGCTTCTAAAGGTCCTTGTCCCTCTGATTGAACCCTTAACAGAGCAACAACGGTTGGATGTCTCTAACCTTGGACAATCTTGTCAGCAAGCAGAGGATGCCCTTTCCCAAGGTATGGATAAACTCCAGCAAACACTAGCTGAAACTGTAGTAGCTGGGCAGATAGTTGAAGGAGCTTATATTCCTCAGATGGCTACTGCAATGGAGAAAATGGAAGCTCTGGTGAGCTTTGTAAACCAGGCTGACCATCTTCGGCAAGAAACCTTGCAGCAAATGTTTCGGATTCTTACAATCCGTCAGGCAGCTCGATACCTGCTGGCTTTGGGGGAATATTTCCAACGCCTGCGTGCCTTGAGCTCACTATGGGCTAATCGTCCTCGTGAACCAGCTTAG 1080 0.4398 MNSPSTQFVSSRRMGVYDPIHQISMWGENFKSNGNLSALIGEADVKLGNQPEDASHGTLGTSKKYAQEANKPFDKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELDHARQQGLYMGGGLDSNHLGFAGSVNSGITTFEMEYGHWIEEQNRQICELRGALNAHIGDMELRILVDGIMNHYFELYRMKSAAAKADVFYMMFGMWKTTAERFFLWIGGFRPSELLKVLVPLIEPLTEQQRLDVSNLGQSCQQAEDALSQGMDKLQQTLAETVVAGQIVEGAYIPQMATAMEKMEALVSFVNQADHLRQETLQQMFRILTIRQAARYLLALGEYFQRLRALSSLWANRPREPA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0253 359 Gene3D - 74 123 - -
Glsi02g0253 359 Pfam bZIP transcription factor 74 107 IPR004827 GO:0003700|GO:0006355
Glsi02g0253 359 Coils Coil 94 121 - -
Glsi02g0253 359 ProSiteProfiles DOG1 domain profile. 144 354 IPR025422 GO:0006351|GO:0043565
Glsi02g0253 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 73 115 IPR004827 GO:0003700|GO:0006355
Glsi02g0253 359 FunFam BZIP family transcription factor 74 123 - -
Glsi02g0253 359 PANTHER TRANSCRIPTION FACTOR TGA9 1 357 - -
Glsi02g0253 359 SMART brlzneu 71 131 IPR004827 GO:0003700|GO:0006355
Glsi02g0253 359 Pfam Seed dormancy control 161 236 IPR025422 GO:0006351|GO:0043565
Glsi02g0253 359 SUPERFAMILY Leucine zipper domain 75 115 IPR046347 GO:0003700|GO:0006355
Glsi02g0253 359 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 78 93 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0253 Glsi-ChrGlsi02 1625379 1630821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0253 1 359 Calmodulin-binding Proteins AT5G65210 69.293 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi02g0253 DOG1 2.5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0253 02 1625379 1630821 Glsi02g0253 02 1625379 1630821 CCT
Glsi02g0253 02 1625379 1630821 Glsi02g0253 02 1625379 1630821 ECH