Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0249 ATGGCGGATCACTCAGACTCTTCCCCTCTAATCCCTCCACCAACGATCACTGACCCCAGCGAGATCGACCTGGAAGCGGGCCCCAGCGAACAAATTCAATGTCGGATTTGTCTCGAAACTGATGGTAGAGACTTCATAGCTCCTTGCAAGTGCAAAGGTACATCAAAATATGTACATCGAGAATGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCATTGCACAACCTGTAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGAACCTTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATATTTCTGGCTGTTCAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTATCTAATGGATGGTTACCAGCAGTACTGGCTTCGTCTTGTTTGGGGTTTTGATAGTGAGCTTAGCTTTTACTACATATGCGGGGCTTTGTTGTTTTTTGCTTTGCTTGGCCTATCTGGCTGCTTCATTACTTGTTATGATCGAAGAGTTCGTAATGATTTGGCTCAGCCTTGTCGAGAATTATGTCTTTGTTGCTGCCAACCTGGAGTTTGTGCAGACTGTCATTTGCCAGGAACTCTTTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACCGAATGTGGTGGTTGCTTGGGAGGTGCCGGGGAAGCAGGGCTACCATTATTATTCATAATGGCTTTGATTGTTTTGGGACTTTTTACTGTAATTGGAATATTTTACAGTGTATTGGTGGCTACCATGGTAGGACAACGAATATGGCAGCGACATTATCACATACTTGCCAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGGACGTTGATGGGGAGATGACAGGTTCTGATTGGTGCCCCCCATCTCTCCCGCCTGAGCACGTTCAGCAGCTGAAATCACTTGGCCTCCTATGA 972 0.4516 MADHSDSSPLIPPPTITDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLMDGYQQYWLRLVWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWCPPSLPPEHVQQLKSLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0249 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Glsi02g0249 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Glsi02g0249 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Glsi02g0249 323 MobiDBLite consensus disorder prediction 1 22 - -
Glsi02g0249 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Glsi02g0249 323 SUPERFAMILY RING/U-box 29 86 - -
Glsi02g0249 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 96 IPR013083 -
Glsi02g0249 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0249 Glsi-ChrGlsi02 1609128 1612705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0249 1 323 C3H Transcription Factor Family AT2G22120 84.568 0.0 559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0249 02 1609128 1612705 Glsi02g0249 02 1609128 1612705 CCT
Glsi02g0249 02 1609128 1612705 Glsi02g0249 02 1609128 1612705 ECH