Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0247 ATGACGGCTTTCTCTGAGCTCTTCTCTCAGATTTGCTCCAAGATCATAGCCTTATTGGCTCTCTTGCTCATATACCTTATGCTCCTTATAAGGAAGCTCAAGTCAGAAACGCGTCCAATTACCACCACCCAGTACCTCAAACTCATCGAACAGAAGAATCCCACAATTTGTTACACCAAGAGATTGAAGCCGGAGCACGTAGAGTGCAGGGTGTGCTTATCTGAATTCAAGGAAGGGGAAAGAGTGAGGAACTTGAAATGCAGACATACATTTCACAAGGACTGCTTGGACAAGTGGTTGCAGCAATATTGGGCTACTTGCCCACTTTGCAGGAACCAAGTTCTGCCACAAGATGTTGTGGCCAAGTATCGCCAGCGTCAAAATCAGAGGGACGACTTCTTCTCCTTTTGGGATTCCTCAGAAACAGAATAA 432 0.456 MTAFSELFSQICSKIIALLALLLIYLMLLIRKLKSETRPITTTQYLKLIEQKNPTICYTKRLKPEHVECRVCLSEFKEGERVRNLKCRHTFHKDCLDKWLQQYWATCPLCRNQVLPQDVVAKYRQRQNQRDDFFSFWDSSETE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0247 143 Pfam Ring finger domain 68 111 IPR001841 -
Glsi02g0247 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 116 IPR013083 -
Glsi02g0247 143 PANTHER - 1 131 - -
Glsi02g0247 143 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Glsi02g0247 143 SMART ring_2 69 110 IPR001841 -
Glsi02g0247 143 SUPERFAMILY RING/U-box 50 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0247 Glsi-ChrGlsi02 1603555 1604123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0247 15 131 C3H Transcription Factor Family AT1G15100 34.615 6.55e-21 81.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0247 02 1603555 1604123 Glsi02g0247 02 1603555 1604123 CCT
Glsi02g0247 02 1603555 1604123 Glsi02g0247 02 1603555 1604123 ECH