Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0240 ATGGCGGCCACTCTTGGTTGGAGGTTTGCTGCCAACAACGGCGGCAGCCTTGCTGCTAATGATATGGAAAGAAATGGTGAGGGGAACGTGCAAGATTCAGAGCCCCCAACTCCACATTCCGTTTTGAAGATGGGATTGAGAGAGCGTGGCAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTTATCCTCGGTACAAGAGAAAGAGTATTCCTTGAGACAATTATTGGAGCTTATTGATATGCGTGAAAATGCGTTCAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCTCTTCTCCGGTCAGGGTCATTGAGTGTGAAGATTCAGGCAGCAACTGTCTTGGGATCCCTTTGTAAAGAAAATGAGCTGAGAGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGGCTACTCAAGTCCAGTTCAGCTGAAGGCCAAGTTGCTGCTGCAAAGACTATTTATGCTGTCTCTCAAGGTGGCTCGAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTACCAGTGCTCTGGGAGCAGCTTCAAAAGGGGATGAAGACAGGAAATGTAGTTGATGGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAGTACTGAGGGATTCTGGAATGCAACAATACAAGCTGGAGGAGTGGACATATTAGTGAAGTTACTGACAACAGGGCAGCCTAGCGCTTTGGCTAATGTATGCTTTTTACTTGCCAGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTTTTGACAGCAGACGCGACAAAACAACTCCTCAAACTATTAGGCCCTGGTAATGATGCCCCTGTTAGAGCTGAAGCCGCTGGTGCTCTTAAATCTCTGTCTTCCCAGTGCAAAGAAGCAAGGCGAGAGATAGCGAATTCTAATGGCATTCCTGCATTGATCAATGCTACCATAGCTCCTTCCAAGGAGTTCATGCAAGGTGAATATGCCCAAGCATTGCAGGAAAATGCTATGTGTGCTCTAGCTAACATCTCCGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCACTTCGCCTACTCAAATTGCTGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATAACAAGGCTGAATCTACTAGAGCATCGGATCCTTTGGCAGTTGAGCAGACATTGCTCAGTCAATTCAAACCTAACTTGCCCTTCCTTGTGAAGGAACGAACCATTGAAGCTCTAGCTAGTTTGTATGGAAATCCCATACTCTCAATTAAACTTGCAAATTCTGATGCAAAACATTTGCTTGTTGGATTAATAACGATGGCTGCAAATGAAGTGCAAGATGAACTCATAAAAGCTCTCTTGACACTATGTAACAATGAAGGCAGTCTATGGCGTGCGCTTCAAGGCCGTGAAGGGGTTCAGCTGCTGATATCTTTGTTGGGACTTTCATCAGAACAACAACAAGAATGTGCAGTTGCTCTGCTTTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCAGCTGGTGGTATACCTCCGCTAGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATTCTTACGAACCTGTGCAACCACAGTGAAGATATACGTGCTTGTGTTGAAAGTGCGGATGCTGTTCCTGCATTGTTGTGGCTACTGAAGAATGGAAGTCCAAATGGGAAGGGGATAGCAGCAAAGACCTTAAATCACTTAATTCATAAATCTGATAGAGCCACTATCAGTCAGCTTACAGCGTTGTTAACAAGTGATCTACCTGAATCTAAGGTTTATGTTTTGGATGCTTTGAGAAGTATGCTATCAGTTGCTCCTCTTAGTGACATTCAACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATGATAAAATTATTGAGCTCTACCAAAGAAGAAACACAGGCAAAGTCTGCATCAGCTCTGGCAGGAATTTTTGAAATGAGGAAAGATGTGTGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCCATGAAGTTACTAAATGTTGAATCTGAAAGTATCCAGATAGAGTCCTCCCGCTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCTGTTGCTAAAGATGCATTATCCCCCCTAGTTGCACTAGCTAACTCTTCTGTTTTGGAAGTTGTGGAGGAGGCAACATGTGCTGTGGCAAATCTTATTTTAGATAGTGAAATTTCAGAGAAAGCTGTTGCTGAAGAAGTTATCTTGCCAGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGAAAAACCCATGCAGCAGCAGCAATTGCTCGCCTCTTACATTCTCGGCAAGTTGATTATTCTGTAACTGATTGTGTGAATCGTGCTGGCACTGTACTTGCTTTGGTTTCCTTCTTAGATTCTGCTATTGATGGATATGTATCCACATCGGAGGCTATAGAAGCACTTGCCATTCTGTCCAGGTCAGAAGAGACCAGTGCACATATTAAACCTGCATGGGAAGTATTGGCTGAATTCCCTGAAAGCATCAGCCCAATAGTCCTGTCTGTTGCTGATTCAACACCAATGTTGCAGGATAAAGCTATTGAGATATTATCTCGATTATGCAGGGATCAGCCTATTGTTTTAGGAGACACTATCGCTACAGCCTCTGCATGTATATGTTCATTAGCTAAAAGGATAATTAGCTCCAAAAATTTAAAGGTCAAAATTGGGGGAGCTGCACTTCTTATTTGTGCTGCAAAAGTAAATCACCAGAAACTGCTGGAGGAACTCAATCAATCAAACTTATGTGCTGATATTGTTCAGTCTCTTGTTCATATACTTGTTTCTGCACAGCCTTCTTTGGGTAATCAGGGTGATGAAAACAAGGAATTGATCAGCATTTGCAGACATACTAAAGAGGATGCCAATGGTGGTGAATCCAATACAGGCACTGCCATTATATCTGGTGCTAACTTAGCTATATGGTTACTGTCTGTTCTTGCTTGTCATGATGAAAAATGTAAAATTGCAATAATGGAGGCTGGAGCAATTGAGGTTCTCACTGACAAGATCTCAAATTGTTTCTCACAATATACTCAGATAGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGAGATATCATAAGAGCACATGCAACCATGAAATCTATACCAGCGCTTGCCAATTTATTGAAGTCAGAGGAATCAGCTAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGGACACTTCTATCTGTTGCTAATTCGGGGGCTGCAAGTGGACTTATCTCCTTGCTTGGTTGCGCTGATATTGATATACAAGACCTTCTGGACTTGTCAGAGGAGTTCTCTTTGGTGAGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATTAGGGTCGGTGCCACTTCTCGGAAGGCAATACCTGCCCTTGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGTTTCTAACTCAGCTTGCTAGAGATTGTCCATCAAATAAGATTGTAATGGTAGAGTCTGGTGCCTTGGAGGCACTTACTAAGTATCTTTCACTGGGTCCTCAAGATGCAACTGAAGAAGCTGCTACTGATCTATTAGGAATTCTGTTTGACAGTGCTGAGATACGAAGACATGAGTCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTTTTACGTTTAGGAGGAAGAGGTGCAAGGTACAGTGCTGCAAAAGCCTTGGAAAGTTTATTCTCTGCTGACCAGATTAGGAATGCAGAGACTGCTCGACAAGCTGTTCAACCTTTGGTGGAGATTCTTAACACTGGATTAGAGAGGGAACAGCATGCTGCAATTGCTGCATTGGTTAGGCTACTGAGTGAAAATCCATCAAGAGCACTAGCTGTTGCTGATGTTGAAATGAATGCAGTGGATGTGCTTTGTAGGATCCTTTCATCAAATTGTTCCATGGACCTCAAAGGGGATGCTGCTGAATTATGTTGCGTTCTATTTGGAAATACAAGGATTAGGTCCTCAATGGCTGCTGCACGCTGTGTTGAACCACTGGTCTCTCTCCTTGTAACTGAGGTTAATCCTGCTCAGCATTCAGTTGTCCATGCATTGGATAGGCTTGTTGATGATGAACAACTGGCAGAACTAGTTGCTGCTCATGGTGCAGTTATTCCACTTGTTGGCCTACTCTATGGTAGGAATTATGTGCTTCATGAGGCCATTTCCAGAGCTTTGGTCAAGTTAGGGAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCCGGAGTTATTGAAAGCATACTTGACATTCTCCATGAAGCACCTGATTTTTTATGTGCAGCTTTTGCAGAATTGCTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGAGCATCTGCTGCTAAAGTGGTTGAACCCCTATTTTTGTTGCTGACAAGACAAGAATTTGGGCCTGATGGACAGCACAGTGCACTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGCCGTGCTGACTATTCATTGACGTCTCACCAAGCTATTGAACCACTTATCCCCTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTACTTTTGGAAGAACACCTTCAGAAAGATCCAGCAACACAGCAAGTAATTGGTCCTCTTATTCGAGTTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAGGCCCTAGTTAGTGTTGCAATGACATGGCCAAATGAAATTGCAAAAGAAGGTGGTGTTGTTGAACTTTCTAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCATGCTTTATGGGAGTCTGGTGCTTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACCTGGAAGTACCTGTTGCTGTGTTGGTGAGGTTGCTTCGTTCTGGTTCAGAGAGCACAATTATTGGTGCATTAAATGCTCTTCTAGTGTTGGAGAGTGATGATGGAACCAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATTGAGGCTCTCTTAGAGCTTCTAAGATCTCATCAGTGTGAGGAAACTGCTGCTAGACTCTTGGAAGTATTGCTGAACAACGTTAAGATCAGAGAAACAAAAGCTACTAAATCAGCCATCTTACCTTTATCCCAGTACCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGTTACTGGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAACTGATGCAGTTTCAGCATGTCGTGCTTTAGTGAATGTGCTTGAAGATCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCCTTACAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCTGAGGCGGGTGGTGTTCAGGTTGTATTGGATCTAATAGGTTCCAGTGATCCAGAAACGTCTGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTTTCTAATCATACAATTCAAGAGTATGCTTCAAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGATTTATGGGCTACTGGAACGGTAAATGATGAGTATCTGAAAGCCTTAAATTCTCTTTTTAGCAACTTCCCACGACTGAGGGCAACTGAGCCAGCAACACTTAGCATTCCCCATTTGGTTACATCATTAAAGACAGGCTCAGAGGCCACTCAAGAAGCTGCCTTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTCTCAAGAGCTCAGTCAATAGCTGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCGGGGACATTGGTTGTTATCATCAAGCGTGGTAACAATATGAAGCAGTCGGTTGGAAACCCCAGTGTCTATTGTAAGCTTACACTTGGCAATACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGCCCGCCGAAAGGCCAGAAACTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTTCGTTTGGGAAAGTGACAATCCAGATTGATCGGGTCGTAATGCTTGGTGCAGTAGCTGGGGAGTACACTCTCTTGCCCCAAAGTAAGAGTGGCCCCTCAAGGAATTTAGAAATAGAATTTCAGTGGTCCAACAAGTGA 6459 0.4338 MAATLGWRFAANNGGSLAANDMERNGEGNVQDSEPPTPHSVLKMGLRERGSSSMEDPDGTLASVAQCIEQLRQSLSSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLSVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIYAVSQGGSKDHVGSKIFSTEGVVPVLWEQLQKGMKTGNVVDGLLTGALKNLSSSTEGFWNATIQAGGVDILVKLLTTGQPSALANVCFLLASMMMEDASVCSKVLTADATKQLLKLLGPGNDAPVRAEAAGALKSLSSQCKEARREIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRASDPLAVEQTLLSQFKPNLPFLVKERTIEALASLYGNPILSIKLANSDAKHLLVGLITMAANEVQDELIKALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILTNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKGIAAKTLNHLIHKSDRATISQLTALLTSDLPESKVYVLDALRSMLSVAPLSDIQREGSAASDAIDTMIKLLSSTKEETQAKSASALAGIFEMRKDVCESSIAVKTLWSAMKLLNVESESIQIESSRCLAAIFLSIKENRDVAAVAKDALSPLVALANSSVLEVVEEATCAVANLILDSEISEKAVAEEVILPATRVLREGTISGKTHAAAAIARLLHSRQVDYSVTDCVNRAGTVLALVSFLDSAIDGYVSTSEAIEALAILSRSEETSAHIKPAWEVLAEFPESISPIVLSVADSTPMLQDKAIEILSRLCRDQPIVLGDTIATASACICSLAKRIISSKNLKVKIGGAALLICAAKVNHQKLLEELNQSNLCADIVQSLVHILVSAQPSLGNQGDENKELISICRHTKEDANGGESNTGTAIISGANLAIWLLSVLACHDEKCKIAIMEAGAIEVLTDKISNCFSQYTQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAASGLISLLGCADIDIQDLLDLSEEFSLVSYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLTQLARDCPSNKIVMVESGALEALTKYLSLGPQDATEEAATDLLGILFDSAEIRRHESAFGAVTQLVAVLRLGGRGARYSAAKALESLFSADQIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCVLFGNTRIRSSMAAARCVEPLVSLLVTEVNPAQHSVVHALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDFLCAAFAELLRILTNNASIAKGASAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPATQQVIGPLIRVLGSGIHILQQRAVKALVSVAMTWPNEIAKEGGVVELSKVILQADPSLPHALWESGASVLASILQFSSEFYLEVPVAVLVRLLRSGSESTIIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTTDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSSFGKVTIQIDRVVMLGAVAGEYTLLPQSKSGPSRNLEIEFQWSNK 2152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0240 2152 CDD C2 2033 2123 - -
Glsi02g0240 2152 Gene3D - 1179 1392 IPR011989 -
Glsi02g0240 2152 Gene3D - 645 817 IPR011989 -
Glsi02g0240 2152 Gene3D - 1798 2029 IPR011989 -
Glsi02g0240 2152 SUPERFAMILY ARM repeat 873 1160 IPR016024 -
Glsi02g0240 2152 SMART C2_3c 2032 2128 IPR000008 -
Glsi02g0240 2152 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1381 1615 - -
Glsi02g0240 2152 Gene3D C2 domain 2030 2152 IPR035892 -
Glsi02g0240 2152 SUPERFAMILY ARM repeat 1187 1568 IPR016024 -
Glsi02g0240 2152 SUPERFAMILY ARM repeat 1621 2029 IPR016024 -
Glsi02g0240 2152 Pfam C2 domain 2031 2122 IPR000008 -
Glsi02g0240 2152 Gene3D - 1696 1797 IPR011989 -
Glsi02g0240 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515
Glsi02g0240 2152 SUPERFAMILY ARM repeat 66 642 IPR016024 -
Glsi02g0240 2152 Gene3D - 818 1171 IPR011989 -
Glsi02g0240 2152 MobiDBLite consensus disorder prediction 16 39 - -
Glsi02g0240 2152 ProSiteProfiles C2 domain profile. 2012 2129 IPR000008 -
Glsi02g0240 2152 Pfam Armadillo/beta-catenin-like repeat 105 135 IPR000225 GO:0005515
Glsi02g0240 2152 Pfam Armadillo/beta-catenin-like repeat 526 565 IPR000225 GO:0005515
Glsi02g0240 2152 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2031 2152 - -
Glsi02g0240 2152 FunFam Coatomer beta subunit 1617 2030 - -
Glsi02g0240 2152 Coils Coil 298 325 - -
Glsi02g0240 2152 Gene3D - 1393 1695 IPR011989 -
Glsi02g0240 2152 SMART arm_5 1399 1439 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 269 310 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 1858 1898 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 1567 1608 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 1185 1228 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 312 361 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 1482 1522 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 95 136 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 568 608 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 818 860 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 1731 1770 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 137 177 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 734 772 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 1312 1353 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 1440 1480 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 647 687 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 526 566 IPR000225 GO:0005515
Glsi02g0240 2152 SMART arm_5 1230 1271 IPR000225 GO:0005515
Glsi02g0240 2152 Gene3D - 51 414 IPR011989 -
Glsi02g0240 2152 Gene3D - 415 644 IPR011989 -
Glsi02g0240 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1197 1241 IPR000225 GO:0005515
Glsi02g0240 2152 SUPERFAMILY ARM repeat 536 910 IPR016024 -
Glsi02g0240 2152 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 30 2152 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Glsi02g0240 2152 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2031 2139 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0240 Glsi-ChrGlsi02 1555844 1565290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0240 458 635 U-box Gene Family AT3G46510 29.348 4.00e-06 50.1