LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g0233	ATGGTTGCTTCCAGTTCCACCGCCGTGTGTTGCACGCTAGAAGAGCTGTTAGACCTTGAGAAGAATCATTACCACAAAAGGGCTCAGTGGGTGATGAATTCTCCTGACCCACCAAGCCTATGGCGTCAGGTCGTGGACAACGTGAAGGATACCGTCTTACTGCGACCAAATTTCTCACCCCTAAACAATCAACCTCCGCCCAAACGCCTGTTTCGATCTTCTCTTGCAGCACTTGTTTCCCATCCTCGGCTTGAGTCAACGTTTCCCCTTGTGAAAACCTCAAAATTTACAGGTTCTTTCTCACTTACTGCTGTAAATTATAGTGTTGGGTCGGAAACATTGGTATCGAGCATAGTGATGGCCTCAATGATTCTTTCTCATGTCCTCGTATCACTTGAATATTCGACAGGGTGGTTGTGTTTCACTCCACCAACAGTAGTACTAGCTTCAATGATTCTTTCCACTCTACCAGGACTCATTGACCTTAAGAAAGCTCAAGACATTTGGAGAGTTGATAAGATAGATTTCCTTGGTTGCGCTGGAGCCTTTTTTGTGGTGTTAATTGCATCTGTGGAAGTTACGATATCATTTGCAAAAATATTCATTCCGATCTCAATTCAACCTGGCATAGCCATTGTTGGGAGACTTCCTGGCACTGATGCATTTTGTGATGCTGAACAATATCCAGTGGCGGTCAAGATTCCCGGAGTCTTAGTAGTTCGTGTCAAATCTGCTTGGCTTTGTTGTGCAAATGCCAATCTTGGTAGGGAAAGGATTGTGAGATGGGTGATCGATGAAGATGCGGAGAATCCCAAAGGAGAAACTACCTTCAAACTCATTGATTGGCTCTATATAAGGTGCTTCAAATATTGTGTCCTTCCTGCTTCAAAGTTGTCGGGGCGAGAGCACTTGGGAATCACGTTTAATGAGAGTGCAGTGAGTGTGGCCTTTCTCGGGACAAAGTTCTCCCAAACACTTCAATCAAATATGGCTTCTTCAGCTGTCGAGTCCTTCGAATTGGAGGACATCGAGAAGAAGGCAGAGGATCATGATGTAAGGTTTGAGTGGGTGCTCAATGCTCCTGAGCCCCCCACTCCCTGGCGTCAGCTTTCTGATTCTCTCACCAAAACCATTTCCCTCTCTCGAGAAAGGCTTTCCTCTCTCAGAGACCAACCCGGACCCAAGCTTCTGCTTTCCATCTTGCAGGGGATTTTCCCAATTCTTCATTGGGGCCGAAGCTATACTGTAACCAAATTCAGGAACGATTTAGTTGCAGGTCTAACTATTGCTAGTCTCTGCATTCCCCAGAGCATTGGGTATGCGACCTTAGCACACCTCGATCCTCAATATGGCCTCTATACAAGTGTTGTGCCGCCTCTTATCTATGCTGTAATGGGGTCTTCAAGAGAGATAGCAATTGGACCCGTGGCTGTGGTTTCACTTCTTTTGTCCTCAATGGTTCCGAAATTAATAGACCCTTCCAATGATCCGATTGGTTATACGAAGCTTGTTTTGACGACCACACTGTTTGTTGGTATCTTTCAGGCTGCGTTCGGCCTCTTCAGGCTGGGATTCCTGGTAGATTTTCTGTCGCATGCTGTTATAGTTGGATTCGTGGCGGGAGCAGCTGTTGTTATTGGTCTTCAACAGTTGAAGGGACTGTTGGGTATTACTCATTTTACCAACAAAACCGACGTAATCTCTGTCTTCAAAGCTGTCGGGAAAGCATTTCATCATCCCTGGAATCCTCGTAATTTTTTCCTAGGATGCTCGTTCTTGATCTTCATCCTATCAACTAGAATTCTGGCTAAAAGGAAGAAGAAATTGTTCTGGTTGGCAGCAATCTCTCCTCTTGTATCTGTGATACTGTCAACCCTTATTGTTTTCCTGACAAAGGCTGATAAAAATGGAGTTAATATTGTGAAACACATTAAAGGAGGACTCAATCCAAGCTCCATCAATCAGCTAGACTTCAACAGCCCTTATATGGGAGAAGTGGCCAAAATTGGATTCGTTGTTGCTCTTGTTGCCCTCACTGAATCAGTTGCTGTTGGCCGATCTTTTGCATCTATTAAAGGATACAGGCTTGACGGAAACAAGGAAATGGTGTCAATAGGCTTCACCAACATCATAGGATCTTTCACCTCTTGCTATGTTGCAACTGGTTCGTTCTCTCGTACGGCCGTTAATTTCGCCGCTGGTTGCGAGACTTCAGTGTCAAATATTGTGATGGCCATTACCGTGTTCTTATCACTGCAATTTTTCACGAAGCTCTTATATTACACTCCAACTGCAATTCTTGCTTCAATTATCCTTTCTGCTCTCCCCGGACTCGTAGACCTCACTGAAGCTTACAAAATCTGGAAGGTTGATAGGCTTGACTTTCTTGCGTGCTCCGGAGCCTTCTTTGGTGTGCTTTTTGCCTCTGTGGAGATCGGTCTACTATTGGCGGTAGTAATATCGTTTTCGAAGATAATTCTGATCTCAATTCGACCCGGCACAGAAACTCTAGGAAAACTTCCTGGAACTGATATGTTCTGCGATGTCCGCCAGTATCCTATGGCTGTTAAGACTCCTGGGGTTGTAATAATTCGCCTCAAGTCTGCCCTGCTTTGCTTTGCAAATGCCAATTTCGTTAGGGAAAGGATCATCAAATGGGTCACACAGGAAGAATTAGAGGACGACAAGGGAAATACCAGAAAGATCATTCAGCTCGTAATTCTCGACATCTCCAATTTGATGAACATGGACACCTCTGGAATTGCTGCTCTTGAGGAACTGCAAAAGAGTTTGGTCTCAAATGGGAAACAACTAGCAATTGCCAGCCCTACTTGGCAAGTCATTCACAAGCTAAAGGCGGCCAACTTTATCAGCAAAATTGGTGGAAAGGTCTTCTTGAGCGTTGGAGAAGCAGTTGGATCCAAATCAGAGTGCTAA	2937	0.4484	MVASSSTAVCCTLEELLDLEKNHYHKRAQWVMNSPDPPSLWRQVVDNVKDTVLLRPNFSPLNNQPPPKRLFRSSLAALVSHPRLESTFPLVKTSKFTGSFSLTAVNYSVGSETLVSSIVMASMILSHVLVSLEYSTGWLCFTPPTVVLASMILSTLPGLIDLKKAQDIWRVDKIDFLGCAGAFFVVLIASVEVTISFAKIFIPISIQPGIAIVGRLPGTDAFCDAEQYPVAVKIPGVLVVRVKSAWLCCANANLGRERIVRWVIDEDAENPKGETTFKLIDWLYIRCFKYCVLPASKLSGREHLGITFNESAVSVAFLGTKFSQTLQSNMASSAVESFELEDIEKKAEDHDVRFEWVLNAPEPPTPWRQLSDSLTKTISLSRERLSSLRDQPGPKLLLSILQGIFPILHWGRSYTVTKFRNDLVAGLTIASLCIPQSIGYATLAHLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSMVPKLIDPSNDPIGYTKLVLTTTLFVGIFQAAFGLFRLGFLVDFLSHAVIVGFVAGAAVVIGLQQLKGLLGITHFTNKTDVISVFKAVGKAFHHPWNPRNFFLGCSFLIFILSTRILAKRKKKLFWLAAISPLVSVILSTLIVFLTKADKNGVNIVKHIKGGLNPSSINQLDFNSPYMGEVAKIGFVVALVALTESVAVGRSFASIKGYRLDGNKEMVSIGFTNIIGSFTSCYVATGSFSRTAVNFAAGCETSVSNIVMAITVFLSLQFFTKLLYYTPTAILASIILSALPGLVDLTEAYKIWKVDRLDFLACSGAFFGVLFASVEIGLLLAVVISFSKIILISIRPGTETLGKLPGTDMFCDVRQYPMAVKTPGVVIIRLKSALLCFANANFVRERIIKWVTQEELEDDKGNTRKIIQLVILDISNLMNMDTSGIAALEELQKSLVSNGKQLAIASPTWQVIHKLKAANFISKIGGKVFLSVGEAVGSKSEC	978

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g0233	978	Gene3D	STAS domain	207	343	IPR036513	-
	Glsi02g0233	978	Gene3D	STAS domain	831	976	IPR036513	-
	Glsi02g0233	978	ProSiteProfiles	STAS domain profile.	871	975	IPR002645	-
	Glsi02g0233	978	Pfam	STAS domain	852	971	IPR002645	-
	Glsi02g0233	978	SUPERFAMILY	SpoIIaa-like	856	973	IPR036513	-
	Glsi02g0233	978	CDD	STAS_SulP_like_sulfate_transporter	852	966	-	-
	Glsi02g0233	978	PANTHER	SULFATE TRANSPORTER	379	973	IPR001902	GO:0016020\|GO:0055085
	Glsi02g0233	978	Pfam	Sulfate permease family	90	179	IPR011547	GO:0016020
	Glsi02g0233	978	Pfam	Sulfate permease family	419	798	IPR011547	GO:0016020
	Glsi02g0233	978	ProSitePatterns	SLC26A transporters signature.	448	469	IPR018045	GO:0008271\|GO:0008272
	Glsi02g0233	978	NCBIfam	sulfate permease	406	968	IPR001902	GO:0016020\|GO:0055085
	Glsi02g0233	978	FunFam	Sulfate transporter 31	831	977	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g0233	Glsi-ChrGlsi02	1504455	1522284	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g0233	320	972	Inorganic Solute Cotransporters	AT5G10180	66.055	0.0	890

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi02g0233	02	1504455	1522284	Glsi02g0233	02	1504455	1522284	ECH