Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0222 ATGGCAGCAGCTATAGACATCCATAGTAGCAGTATGACACCGGATTTCTTAGATCCATGTAGTGAAGAGTTGATGAAAGCACTTGAACCTTTTATGATAAGTGATTCATCTACCTCTCCCCTAGCCTCCTTCTCTCTTTCTTTCCCATCCTCGCAATCTTCTCCTTCGTCTCTGTCTCCTTCCACTTCTTCCTCCTCTGCTCACTCACCCCCTTCCTGCTCTTACAATTCAATTGCTCCTTCTCTGCCCAATTTGTATACCAACGTCTGCTCGTCAACAAGCACTACCCAGGAGTTCTCGAGCTATGACCAAAAGGGTCTTGGGCAGACCAGTCCCATAGGGCTTAACGGACTCACCCAATCTCAAATTCTTCAAATTCAAGCTCAAATCCAGATCCAACAACAGCAGCAGCATATGGTTTCCAAGGCTGCAGCTTCACTCCAGCGTCGGAGGTTAACACAGTTGGAAAATCAACGCGCCCTCAATTTCCTTAGTCCAAAATCCGTCCCCATGAAGCATGTGGGTCCTCATCCAAAACCTACAAAACTATACCGTGGAGTGAGACAGCGGCATTGGGGTAAATGGGTCGCTGAGATCAGACTCCCCAAAAACCGTACCCGTCTCTGGCTAGGAACGTTTGACACCGCCGAAGAGGCCGCCTTGGCATACGATAGCGCAGCATATAAGCTAAGGGGAGAGTTTGCTCGCCTCAATTTTCCTCATCTCCGTCACCAGGGAGCTCATGTATTTGGTGAATTTGGCGATTACAAGCCTCTTCATCCCTCCGTCGATGCGAAGCTCCAATCTATTTGTCAAAGCTTAGCCAATTCGCAGAAACAGGGGAATACAGAGAAACCCTGCGCCGTCATCGATGCAAAGCCTAAGATACGGGGTCCAAAGCAGGCAAAGGTTGAACAATTAAGAAGCGAATTGCAGGATTGTAATGCGGAGAACTCAATTTCGTCCCCCTTGTCGGATGAATCGTCCGCTGGTTCGTACTCACCTAAATCCGATATCAGTCGTTTAGATTTCTCGGATTCTAAGTGGCACGAAACGGAGAGCCTTGGGTTGGAGAAGTATCCTTCGGTGGAGATCGATTGGGCTGCTATCTGA 1113 0.4852 MAAAIDIHSSSMTPDFLDPCSEELMKALEPFMISDSSTSPLASFSLSFPSSQSSPSSLSPSTSSSSAHSPPSCSYNSIAPSLPNLYTNVCSSTSTTQEFSSYDQKGLGQTSPIGLNGLTQSQILQIQAQIQIQQQQQHMVSKAAASLQRRRLTQLENQRALNFLSPKSVPMKHVGPHPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDSAAYKLRGEFARLNFPHLRHQGAHVFGEFGDYKPLHPSVDAKLQSICQSLANSQKQGNTEKPCAVIDAKPKIRGPKQAKVEQLRSELQDCNAENSISSPLSDESSAGSYSPKSDISRLDFSDSKWHETESLGLEKYPSVEIDWAAI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0222 370 CDD AP2 182 242 IPR001471 GO:0003700|GO:0006355
Glsi02g0222 370 ProSiteProfiles AP2/ERF domain profile. 183 240 IPR001471 GO:0003700|GO:0006355
Glsi02g0222 370 MobiDBLite consensus disorder prediction 315 345 - -
Glsi02g0222 370 MobiDBLite consensus disorder prediction 315 340 - -
Glsi02g0222 370 PRINTS Ethylene responsive element binding protein signature 184 195 IPR001471 GO:0003700|GO:0006355
Glsi02g0222 370 PRINTS Ethylene responsive element binding protein signature 206 222 IPR001471 GO:0003700|GO:0006355
Glsi02g0222 370 MobiDBLite consensus disorder prediction 44 73 - -
Glsi02g0222 370 Gene3D AP2/ERF domain 183 241 IPR036955 GO:0003700|GO:0006355
Glsi02g0222 370 SMART rav1_2 183 246 IPR001471 GO:0003700|GO:0006355
Glsi02g0222 370 Pfam AP2 domain 184 233 IPR001471 GO:0003700|GO:0006355
Glsi02g0222 370 SUPERFAMILY DNA-binding domain 183 241 IPR016177 GO:0003677
Glsi02g0222 370 FunFam Ethylene-responsive transcription factor 2 182 241 - -
Glsi02g0222 370 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 6 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0222 Glsi-ChrGlsi02 1433352 1434464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0222 3 370 AP2-EREBP Transcription Factor Family AT4G39780 42.818 2.85e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g0222 AP2 4.8e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0222 02 1433352 1434464 Glsi02g0222 02 1433352 1434464 ECH