LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g0219	ATGTCTATTACTGTTGCCGTATCCAACTCTTCCATTTTCACTGCGACGGCACAAAAACCGCCGGCCGCTCAGGGAGGTTACATCTCCATTGCAAGGAAGAAGTTTTTGAAGAACCTTGAAATCAATGGGGGTGCAAGAATTAATGCCTGGGTTGACTCCATGAGAGCCTCTTCTCCTACCCATGTCAAAACGACTCCTTCTCTGGGTGAAGAGCAGAGCTCTTGGATTCTTCATCATCCATCAGCATTAGACATGTTTGAGCAAATCATCGATGCCTCCAAAGGAAAGCAGATTGTCGTGTTTCTGGACTACGATGGTACACTCTCGCCTATCGTGGACGACCCGGACCGTGCTTTCATGTCCGACGCGATGAGAAAAACAGTGAGAAAATTGGCAAGGTGTTTTCCCACTGCTATAGTAAGCGGCAGATGCAGAGACAAGGTATACAGCTTTGTTCGTTTGGCTGAACTATACTATGCAGGAAGTCATGGGATGGATATCAAGGGCCCAACTAAAAGTTCTAAATACAATAGAGACAGCAAAGCAGTTCTGTTTCAACCTGCTTGTGAATTTTTACCCATGATAGATGAGGTATATCAACAGTTAGTTGAGAAAACTAGCTCAACTCCTGGAGCTAAAGTGGAGAACAACAAGTTCTGCGTATCTGTTCATTTTCGCTGTGTTGATGAGAAGAAATGGAGGGAACTAGCACACCAGGTTAGATCAGTGTTAAATGAGTACCCGAAGCTCCGTCTTACCCAAGGAAGGAAGGTATTAGAGATACGTCCCCCGATTAAATGGGACAAAGGGGAGGCTCTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTACCGATGTCTTTCCTGTTTACATTGGAGATGATCGATCCGATGAAGATGCATTTAAGAAATTAAGAGAGAGAGGACAAGGTTATGGCATTCTTGTGTCGAAATCTGCGAAGGACACGAGTGCATCATACTCTTTACAGGAACCCGACGAGGTGATGGAGTTTCTTACACGTTTAGTGGAGTGGAAAAGAGCATCCCTGCGAGCACATTCCAGGGTGTAA	1074	0.4497	MSITVAVSNSSIFTATAQKPPAAQGGYISIARKKFLKNLEINGGARINAWVDSMRASSPTHVKTTPSLGEEQSSWILHHPSALDMFEQIIDASKGKQIVVFLDYDGTLSPIVDDPDRAFMSDAMRKTVRKLARCFPTAIVSGRCRDKVYSFVRLAELYYAGSHGMDIKGPTKSSKYNRDSKAVLFQPACEFLPMIDEVYQQLVEKTSSTPGAKVENNKFCVSVHFRCVDEKKWRELAHQVRSVLNEYPKLRLTQGRKVLEIRPPIKWDKGEALEFLLESLGFANCTDVFPVYIGDDRSDEDAFKKLRERGQGYGILVSKSAKDTSASYSLQEPDEVMEFLTRLVEWKRASLRAHSRV	357

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g0219	357	FunFam	Trehalose 6-phosphate phosphatase	98	184	-	-
	Glsi02g0219	357	NCBIfam	HAD-IIB family hydrolase	100	308	IPR006379	-
	Glsi02g0219	357	Gene3D	-	195	356	IPR023214	-
	Glsi02g0219	357	Gene3D	-	98	182	IPR023214	-
	Glsi02g0219	357	NCBIfam	trehalose-phosphatase	96	344	IPR003337	GO:0003824\|GO:0005992
	Glsi02g0219	357	FunFam	Trehalose 6-phosphate phosphatase	194	353	-	-
	Glsi02g0219	357	Pfam	Trehalose-phosphatase	101	333	IPR003337	GO:0003824\|GO:0005992
	Glsi02g0219	357	CDD	HAD_TPP	99	338	-	-
	Glsi02g0219	357	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	18	352	IPR044651	GO:0004805\|GO:0005992
	Glsi02g0219	357	SUPERFAMILY	HAD-like	99	346	IPR036412	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g0219	Glsi-ChrGlsi02	1417705	1419917	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g0219	94	343	Trehalose Biosynthesis Gene Families	AT1G70290	26.692	6.44e-10	58.9

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi02g0219	02	1417705	1419917	Glsi02g0219	02	1417705	1419917	ECH

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