Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0219 ATGTCTATTACTGTTGCCGTATCCAACTCTTCCATTTTCACTGCGACGGCACAAAAACCGCCGGCCGCTCAGGGAGGTTACATCTCCATTGCAAGGAAGAAGTTTTTGAAGAACCTTGAAATCAATGGGGGTGCAAGAATTAATGCCTGGGTTGACTCCATGAGAGCCTCTTCTCCTACCCATGTCAAAACGACTCCTTCTCTGGGTGAAGAGCAGAGCTCTTGGATTCTTCATCATCCATCAGCATTAGACATGTTTGAGCAAATCATCGATGCCTCCAAAGGAAAGCAGATTGTCGTGTTTCTGGACTACGATGGTACACTCTCGCCTATCGTGGACGACCCGGACCGTGCTTTCATGTCCGACGCGATGAGAAAAACAGTGAGAAAATTGGCAAGGTGTTTTCCCACTGCTATAGTAAGCGGCAGATGCAGAGACAAGGTATACAGCTTTGTTCGTTTGGCTGAACTATACTATGCAGGAAGTCATGGGATGGATATCAAGGGCCCAACTAAAAGTTCTAAATACAATAGAGACAGCAAAGCAGTTCTGTTTCAACCTGCTTGTGAATTTTTACCCATGATAGATGAGGTATATCAACAGTTAGTTGAGAAAACTAGCTCAACTCCTGGAGCTAAAGTGGAGAACAACAAGTTCTGCGTATCTGTTCATTTTCGCTGTGTTGATGAGAAGAAATGGAGGGAACTAGCACACCAGGTTAGATCAGTGTTAAATGAGTACCCGAAGCTCCGTCTTACCCAAGGAAGGAAGGTATTAGAGATACGTCCCCCGATTAAATGGGACAAAGGGGAGGCTCTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTACCGATGTCTTTCCTGTTTACATTGGAGATGATCGATCCGATGAAGATGCATTTAAGAAATTAAGAGAGAGAGGACAAGGTTATGGCATTCTTGTGTCGAAATCTGCGAAGGACACGAGTGCATCATACTCTTTACAGGAACCCGACGAGGTGATGGAGTTTCTTACACGTTTAGTGGAGTGGAAAAGAGCATCCCTGCGAGCACATTCCAGGGTGTAA 1074 0.4497 MSITVAVSNSSIFTATAQKPPAAQGGYISIARKKFLKNLEINGGARINAWVDSMRASSPTHVKTTPSLGEEQSSWILHHPSALDMFEQIIDASKGKQIVVFLDYDGTLSPIVDDPDRAFMSDAMRKTVRKLARCFPTAIVSGRCRDKVYSFVRLAELYYAGSHGMDIKGPTKSSKYNRDSKAVLFQPACEFLPMIDEVYQQLVEKTSSTPGAKVENNKFCVSVHFRCVDEKKWRELAHQVRSVLNEYPKLRLTQGRKVLEIRPPIKWDKGEALEFLLESLGFANCTDVFPVYIGDDRSDEDAFKKLRERGQGYGILVSKSAKDTSASYSLQEPDEVMEFLTRLVEWKRASLRAHSRV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0219 357 FunFam Trehalose 6-phosphate phosphatase 98 184 - -
Glsi02g0219 357 NCBIfam HAD-IIB family hydrolase 100 308 IPR006379 -
Glsi02g0219 357 Gene3D - 195 356 IPR023214 -
Glsi02g0219 357 Gene3D - 98 182 IPR023214 -
Glsi02g0219 357 NCBIfam trehalose-phosphatase 96 344 IPR003337 GO:0003824|GO:0005992
Glsi02g0219 357 FunFam Trehalose 6-phosphate phosphatase 194 353 - -
Glsi02g0219 357 Pfam Trehalose-phosphatase 101 333 IPR003337 GO:0003824|GO:0005992
Glsi02g0219 357 CDD HAD_TPP 99 338 - -
Glsi02g0219 357 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 352 IPR044651 GO:0004805|GO:0005992
Glsi02g0219 357 SUPERFAMILY HAD-like 99 346 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0219 Glsi-ChrGlsi02 1417705 1419917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0219 94 343 Trehalose Biosynthesis Gene Families AT1G70290 26.692 6.44e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0219 02 1417705 1419917 Glsi02g0219 02 1417705 1419917 ECH