Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0208 ATGTGCGGGATACTTGCAGTCTTGGGTTGCATCGACAACTCTCAGGCCAAGCGTTCTCGTATCGTCGAGTTGTCTAGGAGGTTGCGGCATAGAGGTCCTGATTGGAGTGGTTTGCATTGCCACGAGAATTATTATCTTGCCCATCAACGACTGGCTATCGTCGACCCTACCTCAGGGGATCAACCTCTATATAACGAAGACAAGACTGTTGTTGTTACTGTAAACGGCGAGATATACAACCACAAGCAATTGCGACAGAAACTGAGTTCTCATCAATTTCGAACTGGAAGTGATTGTGAAGTAATTGCCCACCTTTATGAAGAATACGGGGAAGACTTTGTCGATATGTTGGATGGCATGTTCTCCTTTGTCCTTGTTGACACTAGAGATAAAAGTTTCATTGCAGCTCGCGATGCAATTGGCATTACTCCTCTTTACATGGGCTGGGGCCTTGATGGATCCATATGGTTTGCATCTGAAATGAAAGCTTTGAGTGATGATTGTGAGAGGTTTATATCTTTTCCTCCTGGGCATATATATTCCAGCAAACAGGGAGAATTGAGAAGGTGGTATAACCCACCATGGTATTCACAGCATATCCCATCTGCCCCATATGATCCGATGATTTTACGTGAGGCCTTTGAAAAGGCTGTAGTTAAGAGACTTATGACTGATGTACCATTTGGAGTTCTATTGTCGGGAGGACTGGACTCATCACTTGTTGCTGCTGTCGCCAACCGTTATCTGGCTGAATCTGAAGCTGCTCGTCAATGGGGATCACAGTTACATACATTCTCTGTTGGTTTGAAGGACTCTCCGGATTTGAAAGCTGCCAGGGAGGTAGCAGATTATCTTGGTACTCGTCACCATGAATTTCATTTCACGGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCATATTGAAACATATGATGTGACAACTGTCAGAGCAAGCACTCCTATGTTTCTTATGTCTCGAAAAATTAAATCCTTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACTTGTATTTCCACAAGGCACCTAGCAAGGAAGAGTTTCACCAAGAAACATGTCGAAAAATTAAATCTCTTCATCTTTATGACTGCCTGAGAGCCAATAAATCAACTTCAGCATGGGGTTTAGAGGCACGTGTACCGTTCTTGGATAAAGAATTCATCAACATAGCCATGAGCATGGATCCAGAGTGGAAAATGATAAGGCCTGATCTTGGAAGGATAGAGAAGTGGGTCATACGCAATGCATTTGATGATGATCAGAATCCATATTTACCAAAGCATATTTTGTATAGGCAGAAGGAACAGTTCAGTGATGGTGTCGGGTACAGCTGGATTGATGGCTTGAAGGATCATGCCAACAAACAAGTAACAGATGCGATGTTGATGAATGCAAGTTTTGTTTACCCAGAAAACACTCCTACCACGAAGGAAGCGTACCACTACAGGACAATTTTTGAGAAGTTCTATCCAAAGAATGCTGCTAGGTCAACAGTTCCAGGAGGTCCCAGCGTAGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCAAAAAATCCCGACCCTTCTGGTCGTGCCGCACTCGGGGTTCATGAAGCGGCATACGAGGAAGCACTGGAAACAAAAAATGCCAAACCTCTCAACGGGTCCTTTTAA 1713 0.4378 MCGILAVLGCIDNSQAKRSRIVELSRRLRHRGPDWSGLHCHENYYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLRQKLSSHQFRTGSDCEVIAHLYEEYGEDFVDMLDGMFSFVLVDTRDKSFIAARDAIGITPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGELRRWYNPPWYSQHIPSAPYDPMILREAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVANRYLAESEAARQWGSQLHTFSVGLKDSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPSKEEFHQETCRKIKSLHLYDCLRANKSTSAWGLEARVPFLDKEFINIAMSMDPEWKMIRPDLGRIEKWVIRNAFDDDQNPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANKQVTDAMLMNASFVYPENTPTTKEAYHYRTIFEKFYPKNAARSTVPGGPSVACSTAKAVEWDAAWSKNPDPSGRAALGVHEAAYEEALETKNAKPLNGSF 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0208 570 Gene3D HUPs 195 514 IPR014729 -
Glsi02g0208 570 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 199 483 - -
Glsi02g0208 570 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Glsi02g0208 570 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Glsi02g0208 570 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 192 IPR029055 -
Glsi02g0208 570 FunFam Asparagine synthetase [glutamine-hydrolyzing] 195 514 - -
Glsi02g0208 570 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Glsi02g0208 570 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Glsi02g0208 570 PIRSF Asn_synthetase_glu-h 357 518 IPR006426 GO:0004066|GO:0006529
Glsi02g0208 570 PIRSF Asn_synthetase_glu-h 1 360 IPR006426 GO:0004066|GO:0006529
Glsi02g0208 570 PANTHER ASPARAGINE SYNTHETASE 1 555 - -
Glsi02g0208 570 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Glsi02g0208 570 FunFam Asparagine synthetase [glutamine-hydrolyzing] 2 192 - -
Glsi02g0208 570 CDD AsnB 2 192 IPR033738 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0208 Glsi-ChrGlsi02 1351458 1357200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0208 61 164 PRT Gene Family AT4G38880 37.069 2.29e-08 55.1