Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0201 ATGGGTGCTGCGGGCTCCAAGCTCGAAAAGGCTCTTGGCGACCAATTTCCTGAAGGCGAGCGTTACTTTGGCCTAGAGAACTTTGGTAACACTTGTTACTGCAACAGCGTTTTGCAGGCACTATACTTTTGTGTTCCATTTCGCGAACAATTGCTAGAGTATTATGGAAATAGCAAAAACATAGGGGATACAGAAGAAAATCTTTTAACATGCTTAGCAGACTTATTTTCACAGATAAGTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAGCGATTTGTGCAGAGGTTGAAAAAACAAAATGAACTCTTCCGTAGCTATATGCACCAGGATGCCCACGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATCTTGGAGAAAGAGGCCCAGGGTTCAAAGAATGATCAAGGGACCTCACCACTTTCTGAAACTGCCAATGGACCTAAGAATGGTCCTGCTAAGGGTGCTCAAAAAGAGCCTTTGGTTACGTGGGTGCACAAAAATTTTCAGGGAATACTCACCAATGAGACAAGGTGCTTGCGGTGTGAAACAGTGACTGCTAGGGATGAAACATTTCTTGACTTGAGTCTTGACATTGAGCAGAACAGTTCAATCACAAGCTGTTTGAAAAACTTCAGTTCAACTGAGACATTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGCTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCGCATGTCTTGGTCATCCATCTTAAGCGGTTTAAGTACATTGAACAGCTGGGCCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTCCCTCTTGAACTGAAGTTAAGTAACACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTTGTTGTCCATGTTGGGAGTGGCCCTAACCACGGACATTATGTTAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGATGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAGACATTCTTTGGGTCAGCACAGGAATATTCCAGTAATACAGACCATGGGTACATTTTGTTCTATGAGAGTCTTGCCTCTGGTAACAGGAACTAG 1107 0.4228 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNSKNIGDTEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQGSKNDQGTSPLSETANGPKNGPAKGAQKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLASGNRN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0201 368 Gene3D Cysteine proteinases 5 361 - -
Glsi02g0201 368 MobiDBLite consensus disorder prediction 134 149 - -
Glsi02g0201 368 MobiDBLite consensus disorder prediction 134 160 - -
Glsi02g0201 368 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 362 IPR028889 -
Glsi02g0201 368 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 361 - -
Glsi02g0201 368 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 361 - -
Glsi02g0201 368 Pfam Ubiquitin carboxyl-terminal hydrolase 23 359 IPR001394 GO:0004843|GO:0016579
Glsi02g0201 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 293 311 IPR018200 GO:0004843|GO:0006511
Glsi02g0201 368 CDD Peptidase_C19G 24 360 - -
Glsi02g0201 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Glsi02g0201 368 SUPERFAMILY Cysteine proteinases 21 360 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0201 Glsi-ChrGlsi02 1307541 1312607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0201 24 333 Miscellaneous Gene Families AT2G24640 28.616 1.94e-30 119