Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0197 ATGGGAAGATCTCCGAGCTCCGACGAGAGTGGTTTGAAGAAAGGCCCTTGGACCCCTGAAGAAGATCAGAAGCTTATTAACTACATTCAGAAACATGGTCATGGCAGCTGGAGAGCTCTTCCAAAACTAGCAGGGCTCAACAGATGTGGGAAAAGTTGCAGGTTAAGATGGACCAACTACTTGAGGCCTGACATAAAGCGAGGGAAATTTTCTCAAGAAGAAGAACAGACAATTCTGAATCTCCATGCCATCCTGGGTAACAAATGGTCAGCAATTGCGAGCCACTTACCAGGTCGGACAGATAATGAAATCAAGAATTTCTGGAACACCCATCTCAAGAAGAAGCTGATTCAAATGGGTTACGATCCAATGACTCACCAGCCTCGAACTGACATCTTCTCAAGCTTGCCTCATCTCATAGCGCTGGCCAGTCTCAAAGAGCTTTTGGAGCATCATTCCTGGGAACAAAATGCTGCGAGGCTACAAGCAGAGGCTGTTCAACTGGCCAGGCTTCAATGCCTCCAACATCTCCTGCACCCTCATCAAGCTAATACAAACAGTATTATAAACAGTACCGTCGCGGACATGGATACCAACACCATCAATCATTTGAGCTCCACCGGTACAAATCCATCTCTTGAAACCAACAATCTCCAAATCGACTATGACTACATCTCTTTCTCTCACATGCCTGACTTGGAAACGCCTTCCACCTATCAACCGCCATTAAGTAAGGACATGGTTCAAATCCCGGAATCCATAGTCAGTCACGGAGAAACTAGTTCTCCCAATTCTCCATGGCTTCTCCCATGTTCAAGCACTCCATCTCCTTCCACTATGGCTGCAGCTGCACAGGCCACGGATACTTTATTGAGTACTATGGGCGATAACTGTAGTAGTAGTGCTTGTAATTTCGGGGAAGTGGGTCAATCCATTTGGCCTGATCATGAGTTGCTCCTGGAGGACTCTTTGTTCCATCAGATTGCCTAG 990 0.4657 MGRSPSSDESGLKKGPWTPEEDQKLINYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHAILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDIFSSLPHLIALASLKELLEHHSWEQNAARLQAEAVQLARLQCLQHLLHPHQANTNSIINSTVADMDTNTINHLSSTGTNPSLETNNLQIDYDYISFSHMPDLETPSTYQPPLSKDMVQIPESIVSHGETSSPNSPWLLPCSSTPSPSTMAAAAQATDTLLSTMGDNCSSSACNFGEVGQSIWPDHELLLEDSLFHQIA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0197 329 CDD SANT 69 112 IPR001005 -
Glsi02g0197 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi02g0197 329 SMART sant 13 63 IPR001005 -
Glsi02g0197 329 SMART sant 66 114 IPR001005 -
Glsi02g0197 329 FunFam Transcription factor MYB39 69 130 - -
Glsi02g0197 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi02g0197 329 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi02g0197 329 CDD SANT 16 61 IPR001005 -
Glsi02g0197 329 Gene3D - 11 67 - -
Glsi02g0197 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi02g0197 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi02g0197 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi02g0197 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi02g0197 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Glsi02g0197 329 Gene3D - 69 116 - -
Glsi02g0197 329 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0197 Glsi-ChrGlsi02 1289253 1290461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0197 1 328 MYB Transcription Factor Family AT5G10280 50.000 1.52e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g0197 Myb_DNA-binding 1.9e-17 CL0123