Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0196 ATGACCCGATTATTTCATACTCAGGATTCGAATAGGAGCTCGGATCCTGGGGTTCCCCTTCAGAATCTCTCGATGGTTAGAGTGAGAATGGATTCTCTGCAACGCTTCCTATCCGAATCTATAAACAGCAACGCTTTCGTCAGCAAGGATCAGATGGATATGGTATCCAACGAGATCGTCTCTGCCGTTCACCAGATTATCATCAACGGCGCCGCTCTTGTCTCCTACTCGCAGAATTTGACGGCGGCCGGCGAATCTCTATTACCCCTCGCCGGAGAGTTACCTGAGCCTCCGGATATGGTATCTTCGAAGAAGCCACGTTTGGGTTGTTCGGGTACCGAGAAGGGTAATTTGAAAGTTGAGATTTTGGACGACGAGGAGGTGAAAGATGATGGCGAAGATTGTGAAATCGTGGAGCTTGACGCCATGGAATTGCTAGCGGAGCACGTTCATTTCTGTGAAATTTGCGGGAAAGGATTCAGGCGTGATGCGAATTTGCGTATGCACATGCGGGCACATGGAAATCAATTCAAAACCCCAGAAGCGTTGGCGAAACCCTGTGATAAATTGGACAGCGCACGTCATAGAGCGACTCGGTTTTCTTGCCCATTCGAAGGTTGCAATCGGAATAAGCAGCACAAGAAATTCCGGCCGCTAAAGTCGATTGTTTGCGTGAAGAACCACTTCAAAAGAAGCCACTGTCCAAAAATGTATTCCTGTAATCGATGCCACAAGAAGAATTTCTCTGTGCTTTCGGACTTGAAGAGCCATCTGAAGCATTGCGGGGAGTCAAAGTGGAAGTGCTCGTGTGGAACCACCTTTTCGAGGAAGGATAAATTGTTTGGGCACATAACGCTGTTTGATGGGCATATGCCAGCCCTTGCAGTAGATGAAGAGGATAAGGGGAAGCAAGTTGTGGCGATGGAGATGGAGGAGGAATATGAGGATAGAATGTTGAAGGAAGGGGAATTGGGGGCTAGTAGTTTGGATAATGAGTTGCCGGAAGGATTCTTTGACGATTTAGATGGTTTTGGCTCAATTGACAACTACTGTTTAGAGGAAGCCCTGGGCTTTCCTAATAATGTAACTTATGGAAAACTTGCCTAA 1107 0.4715 MTRLFHTQDSNRSSDPGVPLQNLSMVRVRMDSLQRFLSESINSNAFVSKDQMDMVSNEIVSAVHQIIINGAALVSYSQNLTAAGESLLPLAGELPEPPDMVSSKKPRLGCSGTEKGNLKVEILDDEEVKDDGEDCEIVELDAMELLAEHVHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPCDKLDSARHRATRFSCPFEGCNRNKQHKKFRPLKSIVCVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHLKHCGESKWKCSCGTTFSRKDKLFGHITLFDGHMPALAVDEEDKGKQVVAMEMEEEYEDRMLKEGELGASSLDNELPEGFFDDLDGFGSIDNYCLEEALGFPNNVTYGKLA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0196 368 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 11 318 IPR044300 GO:0010044|GO:0010447
Glsi02g0196 368 SMART c2h2final6 200 233 IPR013087 -
Glsi02g0196 368 SMART c2h2final6 238 260 IPR013087 -
Glsi02g0196 368 SMART c2h2final6 151 173 IPR013087 -
Glsi02g0196 368 Gene3D Classic Zinc Finger 226 293 - -
Glsi02g0196 368 FunFam Zinc finger 45-like 148 174 - -
Glsi02g0196 368 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Glsi02g0196 368 Gene3D Classic Zinc Finger 150 173 - -
Glsi02g0196 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Glsi02g0196 368 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0196 Glsi-ChrGlsi02 1278170 1279276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0196 123 298 C2H2 Transcription Factor Family AT1G34370 60.109 1.51e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g0196 None None None