Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0190 ATGAAAGACAAGAAAGCCAGAGATATTGAAAAGAAAAAGAAACACAATTTTAGGATTTTTCTGCAGTTGAGAATTGAGATGAAGAACAAAATTTTTCAACAAGATTCGAGATGGGTCTTTAAGCCCTGCCGGATTCATTTTGAATAGGAAGTCAAGCACCGACAGATATACTGGATGGCCATTACTCCTTTTGGAAGTACATCTATTGCACAATGGGGAGTTCGTCCTCAAATTTTCGTGTGGTCTTGTATGACAGGCAAGATTGCATCATCTGGATACAATGTTACAAACAGGGTTAGCTTTATGGCTTCCCCAAGTTCAAGTTGTTTTTCTCGGAATTCCTTGCATGCCGTATTTGACACGGTTTCATCTCAAACTTTGCATCGTCACAAGGGGTCAAGGTTGATAGTTAGAGCAGAGACAGATTACTATTCTGTCCTCGGGGTGTCAAGAAATGCTAGTAAACCTGAAATTAAGAGTGCTTATCGGAAACTTGCCCGGAATTATCATCCAGATGTGAACAAAGAATCTGGAGCAGAAGAGAAATTTAAGGAAATTAGCAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCTATATATGACAGATACGGAGAGGCTGGGCTTAAAGGTTCCGGAATGGGCATGGGTGATTTCAGTAATCCTTTTGATCTGTTTGAGACACTGTTTGAAGGCATGAATCGTGGCATGAACACCAGAGGCTCTTGGAATGGAGCTGTTGATGGTGAAGATGAATATTACAGTCTTGTCTTGAACTTTAAAGAAGCAGTTTTTGGAGTAGAAAAAGAGATAGAGATAAGCCGACTAGAGAGTTGTGGAACTTGCAATGGTTCCGGTGCTAAGCCTGGGACTACGCCATCCAGATGTAGTACCTGTGGAGGTCAAGGCCGGGTTGTCACATCAACAAGGACGCCATTAGGTATTTTCCAGCAGTCAATGACGTGCTCTTCATGTAATGGAACTGGAGAAATTTCGACACCTTGCAACACATGTTCTGGTGATGGTCGAGTGAGGAGAACAAAACGGATAAGCCTGAAAGTCCCAGCTGGCGTGGACTCTGGTAGTCGTTTAAGGGTCCGAAATGAGGGTAATGCAGGAAGACGAGGTGGTTCTCCTGGGGACCTCTTTGTTGTCATTGAAGTTATCCCTGATCCTGTCCTTAAGCGAGATGACACCAACATCTTATACACGTGTAAGGTGTCTTATATTGATGCAATCTTGGGGACAACAATTAAGGTTCCTACTGTAGACGGCATGGTGGATTTAAAAATCCCAGCAGGGACCCAACCCAACACAACACTTGTTATGGCAAGGAAAGGTGTTCCCTTGCTGAATAAAAGCAATATGAGGGGTGATCAATTGGTTCGTGTGCAAGTTGAGATCCCTAAAAGACTGAGCAGTGACGAGAAGAAGCTTCTTGAGGAACTTGCTGATTTAAGCAAAGGCAAGGCTGCGAGCAAGGATGCAACTTTCATGGCCATGACGCTTATTGAGGAGAATTTGGCCGTTCTTGATATCAGAATCGTTGGAGGGGTGAAAATGTGTTGGGTGTTGTAG 1581 0.4326 MKDKKARDIEKKKKHNFRIFLQLRIEMKNKIFQQDSRWVFKPCRIHFEXEVKHRQIYWMAITPFGSTSIAQWGVRPQIFVWSCMTGKIASSGYNVTNRVSFMASPSSSCFSRNSLHAVFDTVSSQTLHRHKGSRLIVRAETDYYSVLGVSRNASKPEIKSAYRKLARNYHPDVNKESGAEEKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGMGMGDFSNPFDLFETLFEGMNRGMNTRGSWNGAVDGEDEYYSLVLNFKEAVFGVEKEIEISRLESCGTCNGSGAKPGTTPSRCSTCGGQGRVVTSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRVRRTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMARKGVPLLNKSNMRGDQLVRVQVEIPKRLSSDEKKLLEELADLSKGKAASKDATFMAMTLIEENLAVLDIRIVGGVKMCWVL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0190 526 Gene3D - 280 343 - -
Glsi02g0190 526 Pfam DnaJ domain 142 203 IPR001623 -
Glsi02g0190 526 CDD DnaJ_C 251 473 - -
Glsi02g0190 526 NCBIfam molecular chaperone DnaJ 142 486 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Glsi02g0190 526 FunFam Chaperone protein dnaJ A6 chloroplastic 139 243 - -
Glsi02g0190 526 CDD DnaJ 142 195 IPR001623 -
Glsi02g0190 526 Gene3D - 390 500 - -
Glsi02g0190 526 PRINTS DnaJ domain signature 144 162 IPR001623 -
Glsi02g0190 526 PRINTS DnaJ domain signature 198 217 IPR001623 -
Glsi02g0190 526 PRINTS DnaJ domain signature 162 177 IPR001623 -
Glsi02g0190 526 PRINTS DnaJ domain signature 178 198 IPR001623 -
Glsi02g0190 526 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 267 346 IPR036410 -
Glsi02g0190 526 SUPERFAMILY Chaperone J-domain 138 235 IPR036869 -
Glsi02g0190 526 Hamap Chaperone protein DnaJ [dnaJ]. 139 497 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Glsi02g0190 526 SUPERFAMILY HSP40/DnaJ peptide-binding domain 395 481 IPR008971 GO:0006457|GO:0051082
Glsi02g0190 526 SUPERFAMILY HSP40/DnaJ peptide-binding domain 248 402 IPR008971 GO:0006457|GO:0051082
Glsi02g0190 526 FunFam Chaperone protein dnaJ 1, mitochondrial 390 497 - -
Glsi02g0190 526 ProSiteProfiles Zinc finger CR-type profile. 267 348 IPR001305 GO:0031072|GO:0051082
Glsi02g0190 526 Gene3D - 250 385 - -
Glsi02g0190 526 CDD DnaJ_zf 280 343 IPR001305 GO:0031072|GO:0051082
Glsi02g0190 526 Gene3D DnaJ domain 139 243 IPR036869 -
Glsi02g0190 526 FunFam Putative Mitochondrial DnaJ chaperone 335 385 - -
Glsi02g0190 526 ProSitePatterns Nt-dnaJ domain signature. 183 202 IPR018253 -
Glsi02g0190 526 Pfam DnaJ central domain 280 343 IPR001305 GO:0031072|GO:0051082
Glsi02g0190 526 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 104 494 - -
Glsi02g0190 526 FunFam Molecular chaperone DnaJ 272 348 - -
Glsi02g0190 526 SMART dnaj_3 141 198 IPR001623 -
Glsi02g0190 526 ProSiteProfiles dnaJ domain profile. 142 206 IPR001623 -
Glsi02g0190 526 Pfam DnaJ C terminal domain 255 470 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0190 Glsi-ChrGlsi02 1238569 1247966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0190 143 205 C2H2 Transcription Factor Family AT1G74250 44.928 3.78e-09 57.4