Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0181 ATGGTGCGAAGAGCCTGTGCCAAAAAGCGTCGTGGGAATCGTCTCATTGGTCTTGATGACGGCACTAGCCGACGCCCTCGGGCTTCTCCAGCCCTATTTTGTGTATCTTGCACAGAGATAAAGCTTTTCCCACTCTGTAGAATAGAATCTGAAACAGGGATGGAGGAGGAAGAGCACGAGGTGTACGGCGGCGATATCCCAGACATGGTAGAGATGGAAGGAGACATGGACTCTCACCACGTCGATGTCGATATGTCTGCTGCTGACGATGACGCCGTCAAGGAGCTGGACGAGATGAAGAAGCGATTGAAGGAAATGGAAGAGGAAGCCGCAGCGCTCCGTGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGTTCAGTTCAAGATCCTGCTAGTGCTGCTGCTTCTCAGGCAAGCAAGGAGGAGGCAGATTCTCGATCTGTTTTTGTTGGCAATGTTGATTATGCTTGCACGCCAGAAGAAGTGCAGCAACACTTCCAATCATGTGGTACAGTGAATAGGGTCACTATCCTAACAGACAAGTTTGGCCAGCCAAAAGGTTTTGCTTATGTGGAATTCCTTGAAACCGAAGCTGTTCAAGAGGCTCTTGTATTGAATGAATCTGAATTGCATGGTCGTCAATTGAAGGTTTTGCCAAAGAGGACCAATGTTCCTGGAATGAAACAGTATCGCCCTAGGCGTTTCAATCCTTACATGGGTTATCGCTTCAGGAGGCCATACCCTCCACCTTACTTTTACTCTCCTTATGGATATGGGAAGGTTCCCAGGTTTAGAAGGCCAACTCGGTTCATGCCTTACTATTAG 825 0.4873 MVRRACAKKRRGNRLIGLDDGTSRRPRASPALFCVSCTEIKLFPLCRIESETGMEEEEHEVYGGDIPDMVEMEGDMDSHHVDVDMSAADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGSVQDPASAAASQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRFRRPYPPPYFYSPYGYGKVPRFRRPTRFMPYY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0181 274 Gene3D - 82 218 IPR012677 -
Glsi02g0181 274 SUPERFAMILY RNA-binding domain, RBD 136 245 IPR035979 GO:0003676
Glsi02g0181 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 216 IPR000504 GO:0003723
Glsi02g0181 274 SMART rrm1_1 147 218 IPR000504 GO:0003723
Glsi02g0181 274 MobiDBLite consensus disorder prediction 122 143 - -
Glsi02g0181 274 CDD RRM_II_PABPs 147 218 - -
Glsi02g0181 274 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 62 230 - -
Glsi02g0181 274 Coils Coil 89 123 - -
Glsi02g0181 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 222 IPR000504 GO:0003723
Glsi02g0181 274 FunFam Polyadenylate-binding protein 1 85 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0181 Glsi-ChrGlsi02 1144734 1155305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0181 143 217 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 9.60e-09 53.9