LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g0178	ATGGAACGGTATGAGATAATCAAGGATATTGGGTCAGGGAACTTTGGGGTAGCAAAGCTGGTAAGAGAGAAACGGAGTGGTGAGTTCTTTGCTGTCAAGTTTATTGAGAGAGGCTTAAAGATTGATGAGCATGTACAAAGGGAGATAATAAACCATAGATCCTTGAAGCATCCTAATATCATTAGATTTAAGGAGGTGTTGCTTACTCCGACTCATCTGGCAATAGTCATGGAATATGCTGCTGGTGGAGAACTTTTTGAAAGAATATGCAATGCGGGTAGATTCAGCGAGGACGAGGCAAGATACTTCTTTCAGCAATTGATCTCCGGAGTCAGCTACTGCCACTCCATGGAAATCTGTCATAGAGATCTTAAGCTGGAAAACACACTACTAGATGGAAGCTCAGCCCCACGACTCAAAATATGCGACTTCGGTTACTCCAAGTCCTCTGTTTTACACTCCCAGCCCAAATCTACGGTAGGAACCCCTGCCTATATTGCACCAGAGGTCTTGTCAAGAAGGGAATATGATGGGAAGGTTGCAGATGTTTGGTCTTGTGGGGTGACCTTATATGTGATGCTGGTTGGCGCTTATCCGTTTGAAGATCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATCCTCAGTGTCCACTATTCTATTCCGGACTATGTTCGTATTTCAAAAGAGTGTAGGCACCTTTTATCTCGAATATTTGTCGCCAACCCGGAGAAGAGAATTACCATCCCAGAAATTAAAAGGCATCCGTGGTTTTTAACGAACTTACCAGTAGAATTTATGGACGAAGGAGAAGGTGGGTTGCAAAATGATGTCAATGATTCATCTCAGAGCATTGAGGAAATACTATCCATTATTCAAGAGGCTCGGAAACCAGGCGACGGCCCAAAAGTAGGTGGGCAGTTTGTGGGGGGAAGCATGGATCTTGATGACATGGACGCAGATGCTGACATTGATGATGTAGAGACAAGCGGCGATTTTGTCTGTGCCTTGTGA	1020	0.4422	MERYEIIKDIGSGNFGVAKLVREKRSGEFFAVKFIERGLKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISKECRHLLSRIFVANPEKRITIPEIKRHPWFLTNLPVEFMDEGEGGLQNDVNDSSQSIEEILSIIQEARKPGDGPKVGGQFVGGSMDLDDMDADADIDDVETSGDFVCAL	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g0178	339	SMART	serkin_6	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g0178	339	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Glsi02g0178	339	Gene3D	Transferase(Phosphotransferase) domain 1	80	266	-	-
	Glsi02g0178	339	FunFam	Serine/threonine-protein kinase SRK2E	80	268	-	-
	Glsi02g0178	339	ProSiteProfiles	Protein kinase domain profile.	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g0178	339	Pfam	Protein kinase domain	4	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g0178	339	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	119	131	IPR008271	GO:0004672\|GO:0006468
	Glsi02g0178	339	SUPERFAMILY	Protein kinase-like (PK-like)	2	266	IPR011009	-
	Glsi02g0178	339	Gene3D	Phosphorylase Kinase; domain 1	1	79	-	-
	Glsi02g0178	339	CDD	STKc_SnRK2	3	259	-	-
	Glsi02g0178	339	FunFam	Serine/threonine-protein kinase SAPK2	1	79	-	-
	Glsi02g0178	339	PANTHER	SERINE/THREONINE KINASE	2	271	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g0178	Glsi-ChrGlsi02	1128829	1131346	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g0178	3	270	CBL-interacting serine-threonine protein kinases	AT4G24400	43.682	1.08e-69	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Glsi02g0178		Pkinase	5.9e-72	CL0016