Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0169 ATGAAGAGACCTGGCAGCTCCGATTCTTTGGGTGCTTTGATGACCATCTGTCCATCTACAGACGAACACAGTCCGAGGAACAACCATGTGTATGGTAGGGAATTCCAGTCCATGTTGGATGGACTAGATGAGGAGGGTTGTGTTGAAGAATCAGGCCACCTGGCCGAGAAGAAACGGCGGCTAAGTGTGGATCAAGTCAAGGCTTTAGAGAAGAACTTCGAGGTAGAAAATAAGCTTGAACCCGAGAGGAAGGTGAAGCTTGCACAAGAACTTGGGTTGCAGCCTAGACAAGTGGCGGTTTGGTTCCAAAACCGCCGAGCTAGATGGAAAACCAAGCAATTGGAGAGAGACTACGGCGTTCTGAAAGCCAATTATGAAGCCCTCAAACTCAACTACGACACCCTCCATCAGGACAACGAAGCATTACTCAAACAGATCAAGGAATTGAAATCAAGATTGCAAGAAGAACCCACTGAGAGCGATCTTTCAGTGAAGGAGGAGATAACCCTGCCTGATTCCGATAACAAGATGATCGAACAGAGTAATCCGCCTCCTGAAACCTCAATTGATCCGGGATCAGAGTGCAAGGACTTGAACTATGACTGCTTCAATAGCAGCAATGGGGTGGGAGCTGCCTCACTCTTTGCAGCAGACTTCAAAGACGGCGCTTCCGATAGCGACTCTAGCGCAATCCTGAACGAAGATAACAGCCCCAACGCGGCCATTTCCTCATGCGGGGCTCTTCAAAGTCACCAGCTTTTGGTGTCACCAAGGTCGTCTCCTCTCCAATTCAATTGCTCTTCATCCTCGTCGCCCTCGTCCTTGAATTGCTTCCAGTTCCAAAGAACGTACCAGACTCAATATGTGAAGATGGAAGAGCACAATTTCTTCAGCGCAGAAGAAGCCTGCAATTTCTTTTCGGAAGAGCAAGCACCCACCCTCCAGTGGTACTGTTCGGACCACTGGAGTTAA 972 0.4887 MKRPGSSDSLGALMTICPSTDEHSPRNNHVYGREFQSMLDGLDEEGCVEESGHLAEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNYDTLHQDNEALLKQIKELKSRLQEEPTESDLSVKEEITLPDSDNKMIEQSNPPPETSIDPGSECKDLNYDCFNSSNGVGAASLFAADFKDGASDSDSSAILNEDNSPNAAISSCGALQSHQLLVSPRSSPLQFNCSSSSSPSSLNCFQFQRTYQTQYVKMEEHNFFSAEEACNFFSEEQAPTLQWYCSDHWS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0169 323 Gene3D - 52 119 - -
Glsi02g0169 323 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Glsi02g0169 323 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Glsi02g0169 323 SMART HOX_1 55 116 IPR001356 GO:0003677
Glsi02g0169 323 Pfam Homeobox associated leucine zipper 112 154 IPR003106 GO:0006355|GO:0043565
Glsi02g0169 323 MobiDBLite consensus disorder prediction 174 188 - -
Glsi02g0169 323 MobiDBLite consensus disorder prediction 1 27 - -
Glsi02g0169 323 MobiDBLite consensus disorder prediction 153 193 - -
Glsi02g0169 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 296 IPR045224 GO:0003700
Glsi02g0169 323 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Glsi02g0169 323 SUPERFAMILY Homeodomain-like 43 114 IPR009057 -
Glsi02g0169 323 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Glsi02g0169 323 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Glsi02g0169 323 CDD homeodomain 57 113 IPR001356 GO:0003677
Glsi02g0169 323 MobiDBLite consensus disorder prediction 153 173 - -
Glsi02g0169 323 FunFam Homeobox-leucine zipper protein HAT5 50 114 - -
Glsi02g0169 323 Coils Coil 111 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0169 Glsi-ChrGlsi02 1067578 1068866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0169 1 322 Homeobox Transcription Factor Family AT2G22430 48.266 5.50e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi02g0169 Homeodomain 2.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0169 02 1067578 1068866 Glsi02g0169 02 1067578 1068866 CCT
Glsi02g0169 02 1067578 1068866 Glsi02g0169 02 1067578 1068866 ECH