Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0167 ATGAAGAAATCCCATCACCCAATTCCCCTCCCTTTCCGGCGAAACCCGGACTGCCACCGTACAGCTTTCTCTCCCTGCGATTTCCGCCCCCCATACAATTCATATTATCACCGTAAACAAGAATTACACCCTAAACAACGCCTTGATCGCCCACCGGGGCACGTTTTCCCCACACGGCCGCCTAATTTTGTTGTCCAGCTACGTTCGGGCCGCCGCAGTGTCCCCAGGGCAGATGTCGAGTCCTTGATCGCAGAATGCAAGTCCAAGCCCGAGACCTTCAGTGTTTGCCGCAGTAATCATATTGCTGCTTCCCTAAATTTCGATCAGTGGGTCGACGCTCTCGAAGCCTTTGTTTACTTCTGGGAATTTCGCCTCAATGAAGTTCACGACTTTATGCCGGAGATCATTTCGCACGTTCTCGTACCTTCCGACATGGACGAGCTACGTGGCCGCCTTCGTGCCCTTTTCGCCAGTCATGTGAAGGGCTTAATGGAAGGCAAGGAAGTGAAGAGATGGCGTGAGGAAAGTGAGCGTGCCTCGAAGGAAATTTCGCATGTCACGAATTTGCTTAAGAAGCCGAAGCAACTAGGCCAGTATTGCGAGCTCAGAGAAAAGAAGAAAGGGCTTGAGGCAGAGAAAAAATTGATTGAAGGGAGAATAACGGAGTTTCAGTCCGCAATGGAGTGTATATTGCGCTACCTTGAGGACAATAAGCTGGAGGAGGCTGGTTGCTCTGTTTTCCGAAAGTTTAACTTTGATGAAGCCTTGGATTGGAAGCGTGTACATAGCCTGATAATCCGGGAGCGTCGCAGACTAGAGGAGGGATTGCCCATTTATGCTTACCGGACTGAGATTCTTCAGAAAATTCATTCTCAACAGATAATGGTATTAATTGGAGAGACTGGTTCAGGGAAGAGTACGCAGTTGGTACAGTTTCTCACTGATTCAGGCATTGGTGCTAATGAGTCCATTATATGCACTCAACCTCGCAAGATTGCTGCCAAATCATTGGCACATAGGGTCCAGGAAGAAAGTTGTGGGTGCTATGAAGACAATTCAATCAAGTGCTATTCAACATGTTCATCCTCAAATGAGTTTAATTCCGGAATAATATTCATGACAGACAACTGTTTACTGCAGCACTACATGAATGATAAGAATTTGTCTGGGATCTCATGCCTCATAATTGACGAGGCTCATGAAAGGAGCCTAAATACAGATCTACTGTTGGCATTGATCAAGAGTTTGCTCAATAGGAGGGTTGAAATGCGGCTTATCATCATGTCTGCTACAGCTAATGCAGAGCAGCTGTCCGATTACTTCTATGGTTGTGGAATTTTTCATGTGGTAGGGAGAAATTTTCAAGTTGATGTGAGATATGTTCCTTCTGCCTCTGCAGGACATGCTGGTACTGCCATCGTTGCTTCATATGTTTCTGATGTTGTGAGAATGGCGACTGAAATTCATAAAACAGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCACAGCTGGAAGTAGAATGGGCTTGTGAAAAGTTTGAAGCTTCCTCTGCTGTTGCTCTACCCCTACACGGAAAACTTTTGCCTGAAGAGCAATTTCGTGTTTTCCAGAACTACCCTGGAAAAAGAAAAGTGATATTTGCAACAAATCTTGCAGAGACATCACTTACAATTCCTGGTGTCAAGTATGTGATAGATTCTGGGTTGGTTAAAGACAGTCGATATGAACCTCGCAATGGCATGAATGTACTTAAAGTTTGCTGGATTAGCCAGAGCTCTGCTAATCAACGGGCTGGCCGTGCTGGCAGGACTGAGCCTGGTAGGTGCTATAGACTCTACTCAGAATCTGATTATGATTCTATGGAACTAAATCAAGAACCTGAGATTCAACGAGTTCATCTTGGTATAGCAGTTTTGAGGATACTTGCTTTGGGAGTGAAGAGTATTCAGGATTTTGATTTTGTTGATGCTCCAAGTGCTAGTGCTATTGAGATGGCAATCAGGAATCTAATTCAATTGGGAGCAATTAGATTAAACAATAAATTTTATGAATTAACTGATGAAGGTAGGTACTTGGTAAAGATGGGCATTGAGCCTAGGCTTGGTAAACTTATTCTTGGCTGTTTCCATTATGGTTTGGGCAAAGAAGGTCTTGTCCTTGCTGCAGTGATGGCCAATGCCAGTAGCATATTTTGCAGAGTAGGAAACGAAGATGATAAACAAAAATCTGATTGTCTTAAGGTGCAGTTTTGCCATCGCCATGGTGACCTCTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGGTTTGCCTCGAGATTGGAAAAACAAATGGTGTTGGGAAAACAGTATCAATGCCAAGTCCATGAGGAGATGCCAAGACACAATAATGGAGCTGGAATCTTGCCTTGAGCATGAACTTGATGTTGTTTTCCCAAGCTACTGGCGTTGGGATCCTTACAAGTCTGCTGATCATGATAAGTATCTAAAAAAGGTTATACTGTCCTCACTTGCTGAGAATGTAGCCATGTTCTCTGGATGCCGTCAACTTGGTTATCAAGTAGCACTAACTGGGCAGCTTGTTCAACTACATCCATCTTGTTCATTGCTAGTATTTGCTGAGAGACCTGGCTGGGTTGTTTTTGGTGAGCTCCTTTCAGTGTCCAGTCAATATTTGGTCTGTGTAAGTGCTTTTGACTTTGAATCACTGTGCACCCTCTATCCTCCTCCCTTGTTTGATGTATTCAAGATGGAAAGGCAGAAGTTGCAAATGAAGATTTTGTCTGGTTTTGGCTGTACTCTGCTCAAGAGATTTTGTGGGAAAGCGAACAGTAGGATGCTTGGTCTTGTGTCGCGCATACGAACAACTTGCATGGATGAACGTATTTTCATTGAAGTCAATGTTGACCAGAATGACATTCAGATATATGCCACTTCTCATGACATGGAAATGGCCCTTAAGTCGGTTAATGAAGTTTTAGAATGCGAGAGAAAATGGCTATGTACTGAATGCATGGAGAAATGTTTGTATCATGGGTCTGGTGTCTCATCTTCAGTAGCCCTGTTTGGATCTGGCGCTGAGATAAAGCATTTGGAACTTGAAAAACGTTGCTTGAGCGTTGATGTATGTCATCCAAATAAAAGTGCAATTGATGATAAGGAGCTTTTGATGTTTTTTGAGAAGAATTCCTCAGGTTGTATCTGTGCTGTGCACAAATTTACAAGCATGGTGCAGGATGTTGAAGACAGAGACAAGTGGGGCAGGATAACATTTCTCTCCCCTGATGCTGCCAAAAGAGCTGCTGCGCTAGATGGCCAGGATTTTCACGGATCCTCCTTGAAAGTTGTTCCTTCACAGATAACTAATGGAGGGGATAAAATATTTTCGTTTCCTGCTGTTAGAGCTAAAATTTTTTGGCCTCGTAGGCTTAGCAAGGGATTTGGTGTAGTTAAATGTGACATAAAGGATGTTACTTCCATGTTAAGAGACTTCTATAACCTTGCAATAGGAGGGAGGTATGTTCGCTGTGAAGCTGGCAGAAGGGACTTGGATAGTGTTGTGATAGGTGGGCTTGATAAAGAACTCTCAGAAGCCGAAATTTTAGATGTACTAAGAACTGCTACAAGTAGGAGGATTGTGGATTTTTTCTTGGTGAGAGGAGATGCTGTTGGAAATCCCCAGTGCAGTGCTTGTGAAGAGGCACTCCTAAAAGAAATTTCTCCCTTCATGCCCAAAAGGTACCCCCACACTAGTTCTTGCCGAGTTCAGGTGTTTCCACCTGAGCCAAAGGATGCTTTCATGAGAGCTTTGATCACTTTTGATGGGAGGTTACATTTGGAGGCAGCAAAGGCTTTGGAGCAAATTGAAGGGAAAGCATTGCCCGGGTGTCTTTCGTGGCAGAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCTTGACATTCCCTACTCCTGTATATCGTGTGATTAAGGAACAACTGGATAAGTTACTTGCAAGTTTCAGCTGTGTTAAGGGTCTTGAGTGGAACCAAGACAAGACTGCTAATGGTTCCCACCGAATTAAGATATCAGCCAATGCCACAAAGACGGTGGCAGAAGTTAGGAGACCTCTGGAAGAACTCGCAAGGGGGAAAACCATTGATCACAAGAGCCTCGCCCCTACAGTTCTACAGCTCCTGTTGTCCAGAGAAGGCTTGAGTCTTAAAAGCTCATTACAGCAAGAGACAGGAACATACATTCTTTTTGAAAGGCACAACCTGAATTTACGGGTGTTTGGCTCACCTGAGAAGGTTGATTTGGCCCAGCAGAAGCTAATTCAGTCTCTACTCTCTCTCTATGAAAGCAAGCAGTTAGAAATCCACCTCCGAGGGAGAGATCTGCCCCCTGACTTAATGAAGCAAGTAGTTAAGAATTTTGGGCCAGATCTCCGTGGGCTAAAAGAGAAGGTACCTGAGGCTGACTTTACTCTCAACACACGCCGCCAGATAATCTTTTTTCGAGGTAACAAAGAGTTGAAACCAAAAGTAGAGGAAATAATTTATGAAATTGCTCGTTCAGGTCATCAACTGGCTGAGAGACTTGAGACTGGGCTGGATTGTCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCGGCTTGAAGGCTGTGGTCATTTGTTCTGCCGATTGTGTTTGGTGGAGCAATGTGAATCTGCTATAAAAAACCGAGGTGATTTCCCAATTTGCTGTGCTCATGAGGGTTGCGGGGATCCCATTTTGCTGACAGATTTGAGATCGCTTATGCTAAATGAGAAGTTAGAGGAACTTTTCAGGGCTTCTTTGGGAGCCTTTGTAGCATCCAGTGGGGGCAATTACAGGTTTTGCCCGTCTCCTGACTGCCCTTCAGTTTATCGAGTGGCAAGTCCAGAGACAGGTGGTGAGCCATTTGTTTGTGGTGCATGTTATGTGGAGACGTGTACGAGGTGTCACTTAGAGTATCATCCGTACGTTTCGTGTGAGAGATACCGGGAGTTCAAGGAAGATCCAGATTCATCTCTGAAGGAGTGGTGCAGGGGGAAAGAACATGTTAAGAGCTGCCCTGCATGTGGGTACACAATCGAGAAGGTAGATGGGTGCAACCACGTTGAGTGCAAGTGTGGGAAACATGTCTGCTGGGTTTGCTTGGACTTCTTTGGATGTAGTGATGAATGTTATAACCATTTGAGAAATATACACATGGCCATCATATAA 5229 0.4435 MKKSHHPIPLPFRRNPDCHRTAFSPCDFRPPYNSYYHRKQELHPKQRLDRPPGHVFPTRPPNFVVQLRSGRRSVPRADVESLIAECKSKPETFSVCRSNHIAASLNFDQWVDALEAFVYFWEFRLNEVHDFMPEIISHVLVPSDMDELRGRLRALFASHVKGLMEGKEVKRWREESERASKEISHVTNLLKKPKQLGQYCELREKKKGLEAEKKLIEGRITEFQSAMECILRYLEDNKLEEAGCSVFRKFNFDEALDWKRVHSLIIRERRRLEEGLPIYAYRTEILQKIHSQQIMVLIGETGSGKSTQLVQFLTDSGIGANESIICTQPRKIAAKSLAHRVQEESCGCYEDNSIKCYSTCSSSNEFNSGIIFMTDNCLLQHYMNDKNLSGISCLIIDEAHERSLNTDLLLALIKSLLNRRVEMRLIIMSATANAEQLSDYFYGCGIFHVVGRNFQVDVRYVPSASAGHAGTAIVASYVSDVVRMATEIHKTEKEGTILAFLTSQLEVEWACEKFEASSAVALPLHGKLLPEEQFRVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGLVKDSRYEPRNGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSESDYDSMELNQEPEIQRVHLGIAVLRILALGVKSIQDFDFVDAPSASAIEMAIRNLIQLGAIRLNNKFYELTDEGRYLVKMGIEPRLGKLILGCFHYGLGKEGLVLAAVMANASSIFCRVGNEDDKQKSDCLKVQFCHRHGDLFTLLSVYKEWEGLPRDWKNKWCWENSINAKSMRRCQDTIMELESCLEHELDVVFPSYWRWDPYKSADHDKYLKKVILSSLAENVAMFSGCRQLGYQVALTGQLVQLHPSCSLLVFAERPGWVVFGELLSVSSQYLVCVSAFDFESLCTLYPPPLFDVFKMERQKLQMKILSGFGCTLLKRFCGKANSRMLGLVSRIRTTCMDERIFIEVNVDQNDIQIYATSHDMEMALKSVNEVLECERKWLCTECMEKCLYHGSGVSSSVALFGSGAEIKHLELEKRCLSVDVCHPNKSAIDDKELLMFFEKNSSGCICAVHKFTSMVQDVEDRDKWGRITFLSPDAAKRAAALDGQDFHGSSLKVVPSQITNGGDKIFSFPAVRAKIFWPRRLSKGFGVVKCDIKDVTSMLRDFYNLAIGGRYVRCEAGRRDLDSVVIGGLDKELSEAEILDVLRTATSRRIVDFFLVRGDAVGNPQCSACEEALLKEISPFMPKRYPHTSSCRVQVFPPEPKDAFMRALITFDGRLHLEAAKALEQIEGKALPGCLSWQKIKCQQLFHSSLTFPTPVYRVIKEQLDKLLASFSCVKGLEWNQDKTANGSHRIKISANATKTVAEVRRPLEELARGKTIDHKSLAPTVLQLLLSREGLSLKSSLQQETGTYILFERHNLNLRVFGSPEKVDLAQQKLIQSLLSLYESKQLEIHLRGRDLPPDLMKQVVKNFGPDLRGLKEKVPEADFTLNTRRQIIFFRGNKELKPKVEEIIYEIARSGHQLAERLETGLDCPICLCEVEDGYRLEGCGHLFCRLCLVEQCESAIKNRGDFPICCAHEGCGDPILLTDLRSLMLNEKLEELFRASLGAFVASSGGNYRFCPSPDCPSVYRVASPETGGEPFVCGACYVETCTRCHLEYHPYVSCERYREFKEDPDSSLKEWCRGKEHVKSCPACGYTIEKVDGCNHVECKCGKHVCWVCLDFFGCSDECYNHLRNIHMAII 1742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0167 1742 Gene3D - 254 452 IPR027417 -
Glsi02g0167 1742 Gene3D - 453 625 IPR027417 -
Glsi02g0167 1742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1529 1609 IPR013083 -
Glsi02g0167 1742 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1661 1739 - -
Glsi02g0167 1742 SUPERFAMILY RING/U-box 1686 1734 - -
Glsi02g0167 1742 CDD RRM_SF 1051 1116 - -
Glsi02g0167 1742 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 830 906 IPR011709 -
Glsi02g0167 1742 ProSiteProfiles TRIAD supradomain profile. 1529 1737 IPR044066 -
Glsi02g0167 1742 ProSiteProfiles Zinc finger RING-type profile. 1533 1575 IPR001841 -
Glsi02g0167 1742 SUPERFAMILY RING/U-box 1531 1597 - -
Glsi02g0167 1742 ProSitePatterns Zinc finger RING-type signature. 1549 1558 IPR017907 -
Glsi02g0167 1742 Gene3D - 1642 1740 - -
Glsi02g0167 1742 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 480 646 IPR001650 -
Glsi02g0167 1742 CDD DEXHc_RHA-like 293 449 - -
Glsi02g0167 1742 Pfam Helicase associated domain (HA2) 667 760 IPR007502 GO:0004386
Glsi02g0167 1742 SMART ha2_5 666 762 IPR007502 GO:0004386
Glsi02g0167 1742 SMART ultradead3 274 459 IPR014001 -
Glsi02g0167 1742 Pfam IBR domain, a half RING-finger domain 1609 1665 IPR002867 GO:0008270
Glsi02g0167 1742 PANTHER ATP-DEPENDENT RNA HELICASE 268 916 - -
Glsi02g0167 1742 SUPERFAMILY RING/U-box 1614 1670 - -
Glsi02g0167 1742 CDD Rcat_RBR_DEAH12-like 1689 1738 - -
Glsi02g0167 1742 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 392 401 IPR002464 -
Glsi02g0167 1742 SMART ibrneu5 1666 1730 IPR002867 GO:0008270
Glsi02g0167 1742 SMART ibrneu5 1600 1665 IPR002867 GO:0008270
Glsi02g0167 1742 Gene3D - 628 671 IPR042035 -
Glsi02g0167 1742 CDD BRcat_RBR 1617 1668 - -
Glsi02g0167 1742 CDD SF2_C_RHA 454 614 - -
Glsi02g0167 1742 Pfam Helicase conserved C-terminal domain 488 605 IPR001650 -
Glsi02g0167 1742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 784 IPR027417 -
Glsi02g0167 1742 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 450 IPR014001 -
Glsi02g0167 1742 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 628 671 - -
Glsi02g0167 1742 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 259 452 - -
Glsi02g0167 1742 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 453 625 - -
Glsi02g0167 1742 Pfam DEAD/DEAH box helicase 282 436 IPR011545 GO:0003676|GO:0005524
Glsi02g0167 1742 SMART helicmild6 508 606 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0167 Glsi-ChrGlsi02 1050202 1056884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0167 1548 1724 C3H Transcription Factor Family AT2G31770 29.189 5.53e-15 78.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0167 02 1050202 1056884 Glsi02g0167 02 1050202 1056884 ECH