Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0165 ATGCCTCCTCCTTCCAATCCTATAAGGGAAACTCTTATCCAAAATTCCAATGCCCACGAAGATCAATTCCCCTCTTCGCTCTTAGGATTATGGCGCCGCCTCATCTTTGCTAAGAAAGTTCATGGGGGATCTCGGACGGAGGAAGAGGAGAAAGTTTACTCCTGGTTATACGCCTTGGCCCGTTCTGACAAAGATTTGGTCTTCGAGTACGTTCAGTCCACCGAAAGAGGCTTAAGTTTCACGGAAGCTGAGAGGAGACTGAGGGAACATGGCCCAAATGTTCCGCTTGAGCATTCTTTTCCAAGCTGGTGGCATCTGCTATGGAACGCTCTTTTCCATCCTTTCAATATCATTCTGATTGTTTTATCTGTCATGTCATTCTTAGCCGGTGATAAACCAAATGGTTGTATCATGCTTACATTGGTTTTTATCAGTGTCTCCCTCCGTTTCTATCAGGAGTACAGCAGCTCAAAAGCAGCCATGAAGCTTACAGAATTTGTGAAATGCCCAATAAAAGTTCAAAGATGCGCAGGTAGAGTTGTGCAGACAGAATTAATAGTTCAAGTTGATCAGAAGGATATAGTTCCTGGTGACATTGTGATTTTTGAACCTGGGGACCTCTTTCCTGGAGATGTCAGATTGTTATCTTCCAAACATCTTGTTGTAAGCCAGGCCTCACTTACTGGCGAATCTTGGACAATAGAGAAAACTGCGGATATCAGAGAAGATTTGAGCACTCCTCTGCTAGATTTAAAGAATATTTGCTTCATGGGCACAAATGTAGTATCAGGTAGTGGCACTGGGCTAGTTGTTTCAACTGGATCTAACACCTACATGAGCACCATGTTCTCAAACATTGGGAAGAAGAAGCCACCAGATGAGTTTGAAAAAGGTCTCCAGCGGATATTTTACGTGCTTGTGGCCGTTATCCTAGTAGTAGCGACCATCATGGTTGTAATTGATTCCTTTACATCCCTTAGATTAAGCAGAAGCATTCTTTTTGGCATCTCCGTTGCATCTGCTCTTACTCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCTAAAGGAGCACTGGCTATGGCTCGAGACCGATGTGTAGTCAAAAGTTTAAGAGCTATACGCGACATGGGATCAATGGATATCCTTTGTATTGACAAGACAGGCACACTCACAATGAACCATGCAATTATGGTTAATCATCCTGACTGCCGTGGGTTACCTCAAGAAAAAATTCTACGCTTTGCCTTCCTCAATTCTTACTTCAAGATAGATCAGAAATATCCTCTGGATGATGCAATTCTGGCATATGTATATTCAAATGGATTCAGGTTTCAGCCATCCAAGTGGAGGAAGATAGATGAGATTCCTTTTGATTTCATTCGACGAAGAGTATCTGTTATCATAGAAACACAAGACACACACTTGCAGTTCTCTGGCAGGTTCATGGTAACCAAAGGGGCATTGGAGGAAGTGGTGAGAGTTTGTTCTTTTGTTGAGAATTTCGATAAGGATGAAGTTTCCACGTTCTCTTCGTATGATTATCAGAGAATGTTAACTTTGGCGGAGGATTTGAGCAACGAGGGATTGAGAATTATAGGAGTAGCTATAAAGAAGCTAGAAATGCAAACAGGGGAAACAAGTAATGGAATTAAGAGCAATGATGAGAATGCTGAAAGAGACATGGTATTCCTTGGTCTAATAACGTTTTATGACCCTCCCAAGGACTCAGCGGAGCAAGCGCTGTGGCGTTTGGCAGAGAAAGGAGTGAAAGCAAAAGTTTTGACAGGTGACTCGCTCTCGTTGGCAGTGAGGGTATGCAAGGAAGTTGGCATCAGTACTACCCATGTAGTAACAGGGCCTGAGTTGGAGCAACTGGACCAAGACAATTTCCATGAGACTGTTAGAAGAGCAACAGTACTAGCTCGGCTCACCCCAATTCAGAAACTTCGTGTAGTGAAATCCTTGCAGACAATGGGAAAACACGTTGTTGGGTTCCTGGGAGATGGCATAAATGATTCACTAGCTCTGGATGCAGCCAATGTAAGCATTTCCGTGGACTCAGGAGTGGCAATTGCCAAAGACATGGCCGATATTATTCTACTTGAGAAAGACCTAAATGTTCTAGTGGCAGGAGTGGAACATGGTCGACTCACTTTTGGGAACACAATGAAATACATCAAATTGTCAGTCATTGCTGACTTAGGAAGTGTGCTCTCCCTGCTCATAGCAACCTTGACCCTTAAATATGAACCTTTGACTTCAAGGCAGCTTCTTACTCAGAACTTCATTTATAGTGTGGGACAGATTGCTATTCCGTGGGACAAGATGGAGGAAGAGTACTTAAAAACTCCTCAGAAATGGTCTGATAGAGGGTTGCCTATGTTCATATTGTGGAATGGTCCTGTGTGCACCCTCTGTGACGTGATAACCCTTTTGTTTCTTTGGTTCTACTACAAGGCTTACCGTGAGATAGATCAGAAGTTTTTCCATTCCGCTTGGTTCATCGAGGGGCTCCTCATGCAGACTCTAATCATTCACTTAATCCGGACAGAGAAAATGCCATTTATTCAGGACATTGCCTCGTGGCCTGTCATGTGTTCTACTGTTGTGATTTCTGCAATTGGAATTGCGATTCCATTTACACCGATAGGAAAGGTCATGGGATTTACGCTTCTCCCACTCTCATATTTCGGTTTTTTAGTCCTTCTTTTTCTTGGATACTTTACAGTTGGCCAGATGGTCAAGAGACTTTACATATTGGTTTATAAAAAATGGCTTTAG 2787 0.4302 MPPPSNPIRETLIQNSNAHEDQFPSSLLGLWRRLIFAKKVHGGSRTEEEEKVYSWLYALARSDKDLVFEYVQSTERGLSFTEAERRLREHGPNVPLEHSFPSWWHLLWNALFHPFNIILIVLSVMSFLAGDKPNGCIMLTLVFISVSLRFYQEYSSSKAAMKLTEFVKCPIKVQRCAGRVVQTELIVQVDQKDIVPGDIVIFEPGDLFPGDVRLLSSKHLVVSQASLTGESWTIEKTADIREDLSTPLLDLKNICFMGTNVVSGSGTGLVVSTGSNTYMSTMFSNIGKKKPPDEFEKGLQRIFYVLVAVILVVATIMVVIDSFTSLRLSRSILFGISVASALTPQMLPLIINTCLAKGALAMARDRCVVKSLRAIRDMGSMDILCIDKTGTLTMNHAIMVNHPDCRGLPQEKILRFAFLNSYFKIDQKYPLDDAILAYVYSNGFRFQPSKWRKIDEIPFDFIRRRVSVIIETQDTHLQFSGRFMVTKGALEEVVRVCSFVENFDKDEVSTFSSYDYQRMLTLAEDLSNEGLRIIGVAIKKLEMQTGETSNGIKSNDENAERDMVFLGLITFYDPPKDSAEQALWRLAEKGVKAKVLTGDSLSLAVRVCKEVGISTTHVVTGPELEQLDQDNFHETVRRATVLARLTPIQKLRVVKSLQTMGKHVVGFLGDGINDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYIKLSVIADLGSVLSLLIATLTLKYEPLTSRQLLTQNFIYSVGQIAIPWDKMEEEYLKTPQKWSDRGLPMFILWNGPVCTLCDVITLLFLWFYYKAYREIDQKFFHSAWFIEGLLMQTLIIHLIRTEKMPFIQDIASWPVMCSTVVISAIGIAIPFTPIGKVMGFTLLPLSYFGFLVLLFLGYFTVGQMVKRLYILVYKKWL 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0165 928 Gene3D - 382 705 IPR023214 -
Glsi02g0165 928 SUPERFAMILY HAD-like 560 716 IPR036412 -
Glsi02g0165 928 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 380 575 IPR023299 GO:0000166
Glsi02g0165 928 Pfam Cation transporter/ATPase, N-terminus 67 126 IPR004014 -
Glsi02g0165 928 Gene3D - 169 273 - -
Glsi02g0165 928 PANTHER CATION TRANSPORTING ATPASE 64 918 - -
Glsi02g0165 928 Pfam haloacid dehalogenase-like hydrolase 381 682 - -
Glsi02g0165 928 SFLD C1.7: P-type atpase like 367 718 - -
Glsi02g0165 928 Gene3D - 135 880 - -
Glsi02g0165 928 Gene3D - 397 572 IPR023299 GO:0000166
Glsi02g0165 928 SUPERFAMILY Calcium ATPase, transduction domain A 179 284 IPR008250 -
Glsi02g0165 928 ProSitePatterns E1-E2 ATPases phosphorylation site. 387 393 IPR018303 -
Glsi02g0165 928 PRINTS Magnesium-transporting ATPase signature 796 812 IPR006415 GO:0015444|GO:0015693|GO:0016020
Glsi02g0165 928 PRINTS Magnesium-transporting ATPase signature 776 789 IPR006415 GO:0015444|GO:0015693|GO:0016020
Glsi02g0165 928 PRINTS Magnesium-transporting ATPase signature 298 314 IPR006415 GO:0015444|GO:0015693|GO:0016020
Glsi02g0165 928 PRINTS Magnesium-transporting ATPase signature 726 741 IPR006415 GO:0015444|GO:0015693|GO:0016020
Glsi02g0165 928 PRINTS Magnesium-transporting ATPase signature 831 852 IPR006415 GO:0015444|GO:0015693|GO:0016020
Glsi02g0165 928 PRINTS Magnesium-transporting ATPase signature 881 902 IPR006415 GO:0015444|GO:0015693|GO:0016020
Glsi02g0165 928 PRINTS Magnesium-transporting ATPase signature 315 334 IPR006415 GO:0015444|GO:0015693|GO:0016020
Glsi02g0165 928 PRINTS Magnesium-transporting ATPase signature 419 432 IPR006415 GO:0015444|GO:0015693|GO:0016020
Glsi02g0165 928 NCBIfam magnesium-translocating P-type ATPase 51 927 IPR006415 GO:0015444|GO:0015693|GO:0016020
Glsi02g0165 928 NCBIfam HAD-IC family P-type ATPase 138 431 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g0165 928 NCBIfam HAD-IC family P-type ATPase 636 746 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g0165 928 SMART Cation_ATPase_N_a_2 58 131 IPR004014 -
Glsi02g0165 928 Pfam E1-E2 ATPase 179 364 - -
Glsi02g0165 928 SFLD p-type atpase 367 718 IPR044492 -
Glsi02g0165 928 SUPERFAMILY Calcium ATPase, transmembrane domain M 69 925 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0165 Glsi-ChrGlsi02 1043385 1047028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0165 58 788 Primary Pumps ATPases(2) AT1G10130 25.962 2.93e-63 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0165 02 1043385 1047028 Glsi02g0165 02 1043385 1047028 ECH