Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0164 ATGGAATCCAAATTCATACATCGGCCCCACCTACTCTTGCTGCTCTTACTCGTCAGTCTCCACCATTGCGCCCAAGCGCAGTCGGGCACATCGTCCACCCCTCCCTTTGGCTTAAGCTTACGCGATAACTTGAAGGCATCGTTCAGCGTCATGGTCGTCGCCTTCCTCTCCGCCTTCGTCCTCATGGGCTTCTTTTCACTCTACCTCCGTCATTGCGCCCACACTTACGTCTCCACAAGGAATCCAATCGCCGCCGCCGACCTCTTCCGCTGCCGTCTCCACCGCGAAGTCATCAACAAATGTCCCGTCCTCATCTATTCCGCCGTCAAGGACCTCAAAATCGGAAAGTTAGCTCTGGAATGCGCCGTGTGCTTGGGCGAGTTCCAGGACAAAGACAAGATCCGGTTGCTGCCAAAATGTCATCACGTCTTTCATCCAGATTGCATTGATGCCTGGTTCATTTCACACCTCACCTGTCCGGTTTGTCGTGCAACGCTCACCTCATCAGATTGCGCAGATAATGCCATCGTGGTCCCAATGGATTCAAACCCCAATGAACTACACCCTGCATCTGGCGAAATTGAGCAACAGAACAGGACAGAATCGCAGGTACCAGCGCAAACTATCAACGTAGGTGAAAGTGGTCCTGCTCTCCTGACGCAGACCACCCCTCCAACCCAATCAAGAATATTGGGCAAGTTTCCAAGGTCACACTCGACGGGTCACTCTTTGATCATGGAACCCGAGGAGACGCTGGATAGGTACACACTGAGGTTGCCAGAGCAAGTGAGAAAGCAGATTCTGCTGAATCATATCAGGATTAGGCGTTCGGCAAGCAGCGACATCGTTTTGCCCGGAGTATGGAGTTCGAAGAGAGGAGGGTACGGGAATGAGGGGGAAGAAAGTGATAACACGGAGAGGTGGGTGTTCTCCATGACCCCGCCATTTGTTTCAAGAGACTGGGGCTCTGCGCAATCCTCGAAACAGGATACTGAAAATTTGTCGCATTGGTCTCCGCCTCCGGTTTAA 1029 0.5258 MESKFIHRPHLLLLLLLVSLHHCAQAQSGTSSTPPFGLSLRDNLKASFSVMVVAFLSAFVLMGFFSLYLRHCAHTYVSTRNPIAAADLFRCRLHREVINKCPVLIYSAVKDLKIGKLALECAVCLGEFQDKDKIRLLPKCHHVFHPDCIDAWFISHLTCPVCRATLTSSDCADNAIVVPMDSNPNELHPASGEIEQQNRTESQVPAQTINVGESGPALLTQTTPPTQSRILGKFPRSHSTGHSLIMEPEETLDRYTLRLPEQVRKQILLNHIRIRRSASSDIVLPGVWSSKRGGYGNEGEESDNTERWVFSMTPPFVSRDWGSAQSSKQDTENLSHWSPPPV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0164 342 SMART ring_2 121 162 IPR001841 -
Glsi02g0164 342 CDD RING-H2_EL5-like 120 163 - -
Glsi02g0164 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 169 IPR013083 -
Glsi02g0164 342 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Glsi02g0164 342 MobiDBLite consensus disorder prediction 215 241 - -
Glsi02g0164 342 MobiDBLite consensus disorder prediction 319 336 - -
Glsi02g0164 342 MobiDBLite consensus disorder prediction 215 234 - -
Glsi02g0164 342 MobiDBLite consensus disorder prediction 319 342 - -
Glsi02g0164 342 Pfam Ring finger domain 120 163 IPR001841 -
Glsi02g0164 342 SUPERFAMILY RING/U-box 102 168 - -
Glsi02g0164 342 FunFam E3 ubiquitin-protein ligase ATL6 83 169 - -
Glsi02g0164 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0164 Glsi-ChrGlsi02 1035883 1036911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0164 9 323 Rapid Response to Elicitors AT3G05200 37.764 1.46e-55 184