Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0159 ATGTATTTTTGTTGGCCATGTCCTGGGCCTGCGTCTGTTACTCGAAGCTTTGTCTTCGTGGGACTCTGGAAACAAACAATAATTATGGGTCTGTCAAACATTCCTAATTTAGGTGAAGGGGTTCTTCCTATCCTGGTGATGAACACCGTCCTGTCGGTGGCTGTGTTGAAGAACGTGTTCAGATCCGTGCTAGAAGCAGTTGGTGTGGCATCCTCCTATTCTCCCAATGTGGAGGAAGAGTCAGATGAATACCCAGAGAGTTCAAGGGGAAGGAGGATCTCAATAACCCAATACAAGTCCTCGTGCCACAGTGGATGGGGTATGGTAGAGTGCTGCGTGTGTCTGTGTGGGTTTGAAGTCAATCAGGAGGTGAGTGAGTTGCCTTGCAAGCATTTCTTCCACAAAGCTTGCTTAGACAAGTGGTTTGATAACAAACACACCACCTGCCCTTTGTGTCGTTCCACGGATTAG 471 0.4777 MYFCWPCPGPASVTRSFVFVGLWKQTIIMGLSNIPNLGEGVLPILVMNTVLSVAVLKNVFRSVLEAVGVASSYSPNVEEESDEYPESSRGRRISITQYKSSCHSGWGMVECCVCLCGFEVNQEVSELPCKHFFHKACLDKWFDNKHTTCPLCRSTD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0159 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 156 IPR013083 -
Glsi02g0159 156 PANTHER - 29 155 IPR044249 -
Glsi02g0159 156 SMART ring_2 111 152 IPR001841 -
Glsi02g0159 156 SUPERFAMILY RING/U-box 110 154 - -
Glsi02g0159 156 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Glsi02g0159 156 Pfam Ring finger domain 110 153 IPR001841 -
Glsi02g0159 156 SMART ringv_2 110 153 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0159 Glsi-ChrGlsi02 1014024 1014494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0159 29 154 C3H Transcription Factor Family AT2G04240 34.014 3.16e-21 82.8