Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0144 ATGGGAAAAAAAGGTGGATTTCTCCGTCATGCAAATGGCGTGGACAAGTTACTCTTACTGTTTGGGACTTTGGGTTGCATTGGAGATGGCCTACAAACCTCTATCACTATGCTCGTTCTTGGTAGTTTGATTGATGACTATGCAGCTCATACATCTGAGAATCCTGTGTTCAAGCATACAGTAGACAAGTACGCTCTCAGGCTGCTCTATATTGCCATTGGGGTGGGTTTATCCTCTTTTATTGAAGGAGTATGTTGGATAAGAACTGCAGAAAGACAAACTTCTCGCATGCGAACTGCATATCTGAAATCAGTCCTTGAGCAGGAAGTGGGTTTCTTCGACAACCAGGTCCAGCCTGACTCCTCCACCACCTTCCAAGTGATTGCCACAGTTTCTTCTGATGCTCAAACTATTCAAGACACCTTGGCTGAGAAGGTGCCCACTTGTTTGGTTCACCTCTCATCATTTTTCTCTAGCTTCATAGTGGCGCTCGTCCTTTCCTGGAGACTAGCAGTTTCTGCTTTTCCATTTTCAGTTATAATGATCATGCCAGCAATTATATTTGGTAAACATCTAAAAGACTTGGGATATAAGATGAAGGATTCTTACGGAGTTGCTGGTAGCATAGCAGAACAAGCAATCTCCTCAATTCGCACAGTTTATTCATATGTAGCTGAGAAACAAACACTAGAAAGGTTTGGCTCTGCTCTTGAAACAAGTATGAAGCTTGGCATAAAGCTGGGTTTCACAAAGGGTGTGGCGATAGGGAGCATGGGGTTGATATATGGAGCTTGGGCATTCCAAACATGGGTTGGAAGCGTTTTGGTCATGAAGAGAGGAGAAAATGGTGGAAATGTATTTTGCGCGGAAATCTGTATCATCTGGGGAGGATTGTCTCTGATGAGTGCACTCCCGAGTCTTGCTTTTATACTAGAGGCAACAACAGCAGCTACCCGGATTTATCAGATGATTGATCGAGTGCCGGCTATAAACTCTGACAAAGAAAAAGGAAAGATTTTGAACAATGTGAGAGGAGAAATCGCTTTTAAAGAAGTTGACTTTAGCTATCCATCAAGGCCAGATACCGCAATTCTCAAAGGACTCAATCTGAAATTGCCAGCAGGTAAAACAATAGGGCTTGTTGGAGGGAGTGGTTCCGGCAAATCTACTATCATTTATTTGCTTGAAAGATTTTATGATCCAGTGAATGGCAAGATATTGCTTGATGGTTATGATATAAAGAGACTTCAACTCAACTGGTTAAGGTCCCAGATGGGACTGGTAAATCAAGAGCCCATTCTCTTTGCAACTTCCATTAAAGAGAACATTCTACTTGGCAAGGAAGGAGCTTCAATGGAAGCTGTTGAAAGGGCAGCAAAGGCTGCCAATGCACACGATTTCATTGTTAAACTTGCTAATGGATATGAAACTCAAATAGGGCAACTTGGAACTCAATTGTCTGGAGGGCAAAAGCAGAGGATTGCCATTGCAAGGGCTTTGATTCGAGACCCAAAAATCCTTCTACTTGATGAAGCTACAAGTGCTTTGGATTCAGCGTCTGAAATAGTAGTGCAAGAAGCCCTTGATTTGGCTTCCCGAGGAAGGACGACAATCATAGTAGCTCACCGTCTTTCCACAATCCGTAAGGCTGACTTGATAGTGGTTCTTCAGTCTGGAAGAGTTGTAGAATCTGGTTCCCACGGTGAGCTAATCCGATTGAACAATGGGGCAGGTGGGACTTACGGCAAAATGCTGCAATTCCAACGAGCAGCCATTCAAAGTGAAGAAGCTACGCACAGCATAAAGAGGAGTCCCCGGAATATAGAAAATCTAAGAACTGCAAACACAAGCTGGCAAAGCAGCCCCGCCCAGCCATTCAGCCTCTCACAGCCATTTAGCCCCATATATTCCATTAGTATTACAGAGTCTTCCCAAATGCCCTCTTGGGATGACTTCGGCAACAAAAACTCAAACAAATCTTCCCATTCAAGTTTCTCCCAATGGCGTTTACTACGAATGAATGCACCTGAGTGGAAGCATGCTTTACTTGGGTGTTTAGGAGCCATTGGCTCAGGAATATGCCAGCCAATTTATTCCTATTGCCTGGGAATAGTTGCGTCCGTTTACTTCATAAAAGATGACTCACGCATCAAATCTGAAATCAAGTTGTACTCCGCCATCTTCTGCGGCCTAGCCGTTGTCAACATCATCTCAGGTCTCCTTCAGCATTATAATTTTGCTATCATGGGAGAACACTTGCTGAAAAGAGTGCGACAAAATTTGCTAGCAAAGGTGCTGACCTTTGAGATAGGATGGTTTGACCAAGAAGATAACACAAGTGCAGCGATTTGTGCACGGCTCGCAACTGAAGCCAATTTGGTTCGATCCCTTGTTGCAGAACGAATGTCAATGCTGGTTCAAGTTTTCTTCATGGCCTCCCTGGCTTTTGTACTGGGTTTGATCGTTTCATGGAGGATAGCCATTATGATGATCGCTATGCAGCCTTTGATAATTGGTTGTTTCTATTCAAAAAGCGTTTTAATGAAAAGTATGTCAGGCAAAGCTCAGAAGGCTCAAAGAGAGGGTAGTCAAATAGCAATGGAAGCTACCATCAATCACAGGACTATTACTGCATTCTCATCTGAGAAAAGGATACTAAATTTGTTTAGAATTGCTATGAAAGGCCCTCAGAACGAAAGCATTAGGCAATCGTGGATTTCAGGTTCCGTCATGTCAATCTCACAGTTTCTGACCACAGCATCAGTAACTCTGACTTTTTGGTATGGAGGGAGGCTGTTAAATCAAGGTTTAGTGGAATCAAAGAACCTTCTACAAGTTATTCTCATCTTGATGAGCACTGGTAGACAAATTGCAGAGACGGGAAGCATGACTTCCGATATAGCCAAAACTGGAAGAGTCATTAGTTCAGTTTTTGCAATCCTGGACAGGAAAAGTCAGATTGAACCTGAAGATGCTGCTACACATAGCAAGTCTAAAAAGACTATAAAGGGTGACATAAAGCTAAAGAACGTATTTTTCTCTTACCCAGCAAGGCCTGACCAAATGATACTCAAGGGCCTCAGTCTTGAGATTGAAGCTGGAAAAACAATAGCATTAGTGGGACAGAGTGGGTCAGGAAAATCCACCATCATTGGGTTAATTGAAAGATTTTATGACCCCGTGAAGGGATCAATAACCATAGATAATCATGCCATAAAGGAATTTGACTTAAGAAAGTTGAGATCGCACATTGCCTTAGTGAGTCAAGAGCCCACCCTGTTTGCAGGAACTATACGGGAGAACATTGTTTATGGGAAGAAGGATGCATCGGAGGATGAAATAAGAAGAGCAGCACGTCTTGCAAATGCCCATGAGTTCATAAGCTCTATGAAAGACGGATATGATACGTACTGTGGAGAAAGAGGAGTGCAGCTATCAGGGGGCCAAAAGCAGAGGGTGGCAATTGCTCGAGCAATACTGAAGAACCCATCAATCCTGCTCTTAGATGAGGCAACCAGTGCTCTAGATAGTGTGTCAGAGAACCTAGTGCAGGAGGCACTGGAGAAGATGATGATTGGAAGAACATGTGTAGTTATAGCTCACCGTTTGTCAACAATACAGAGCGTAGACTCCATAGCTGTGATTAAAAATGGGAAGGTAGTGGAACTAGGATCGCACTCAGAGTTATTGGCCATAGGACCTAACGGGGCATACTACTCTATGATTAGGCTACAACATGGTCCCTCCAACTGA 3753 0.4335 MGKKGGFLRHANGVDKLLLLFGTLGCIGDGLQTSITMLVLGSLIDDYAAHTSENPVFKHTVDKYALRLLYIAIGVGLSSFIEGVCWIRTAERQTSRMRTAYLKSVLEQEVGFFDNQVQPDSSTTFQVIATVSSDAQTIQDTLAEKVPTCLVHLSSFFSSFIVALVLSWRLAVSAFPFSVIMIMPAIIFGKHLKDLGYKMKDSYGVAGSIAEQAISSIRTVYSYVAEKQTLERFGSALETSMKLGIKLGFTKGVAIGSMGLIYGAWAFQTWVGSVLVMKRGENGGNVFCAEICIIWGGLSLMSALPSLAFILEATTAATRIYQMIDRVPAINSDKEKGKILNNVRGEIAFKEVDFSYPSRPDTAILKGLNLKLPAGKTIGLVGGSGSGKSTIIYLLERFYDPVNGKILLDGYDIKRLQLNWLRSQMGLVNQEPILFATSIKENILLGKEGASMEAVERAAKAANAHDFIVKLANGYETQIGQLGTQLSGGQKQRIAIARALIRDPKILLLDEATSALDSASEIVVQEALDLASRGRTTIIVAHRLSTIRKADLIVVLQSGRVVESGSHGELIRLNNGAGGTYGKMLQFQRAAIQSEEATHSIKRSPRNIENLRTANTSWQSSPAQPFSLSQPFSPIYSISITESSQMPSWDDFGNKNSNKSSHSSFSQWRLLRMNAPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDDSRIKSEIKLYSAIFCGLAVVNIISGLLQHYNFAIMGEHLLKRVRQNLLAKVLTFEIGWFDQEDNTSAAICARLATEANLVRSLVAERMSMLVQVFFMASLAFVLGLIVSWRIAIMMIAMQPLIIGCFYSKSVLMKSMSGKAQKAQREGSQIAMEATINHRTITAFSSEKRILNLFRIAMKGPQNESIRQSWISGSVMSISQFLTTASVTLTFWYGGRLLNQGLVESKNLLQVILILMSTGRQIAETGSMTSDIAKTGRVISSVFAILDRKSQIEPEDAATHSKSKKTIKGDIKLKNVFFSYPARPDQMILKGLSLEIEAGKTIALVGQSGSGKSTIIGLIERFYDPVKGSITIDNHAIKEFDLRKLRSHIALVSQEPTLFAGTIRENIVYGKKDASEDEIRRAARLANAHEFISSMKDGYDTYCGERGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDSVSENLVQEALEKMMIGRTCVVIAHRLSTIQSVDSIAVIKNGKVVELGSHSELLAIGPNGAYYSMIRLQHGPSN 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0144 1250 FunFam ABC transporter B family member 4 337 596 - -
Glsi02g0144 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 587 IPR027417 -
Glsi02g0144 1250 SUPERFAMILY ABC transporter transmembrane region 669 988 IPR036640 GO:0005524|GO:0016020
Glsi02g0144 1250 Gene3D - 991 1248 IPR027417 -
Glsi02g0144 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1245 IPR027417 -
Glsi02g0144 1250 PANTHER ABC TRANSPORTER B FAMILY 8 692 IPR039421 -
Glsi02g0144 1250 SMART AAA_5 374 560 IPR003593 GO:0016887
Glsi02g0144 1250 SMART AAA_5 1033 1219 IPR003593 GO:0016887
Glsi02g0144 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524
Glsi02g0144 1250 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Glsi02g0144 1250 FunFam ABC transporter B family member 4 996 1249 - -
Glsi02g0144 1250 ProSitePatterns ABC transporters family signature. 486 500 IPR017871 GO:0005524|GO:0016887
Glsi02g0144 1250 SUPERFAMILY ABC transporter transmembrane region 14 328 IPR036640 GO:0005524|GO:0016020
Glsi02g0144 1250 Pfam ABC transporter 365 514 IPR003439 GO:0005524
Glsi02g0144 1250 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Glsi02g0144 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 347 583 IPR003439 GO:0005524
Glsi02g0144 1250 CDD ABC_MTABC3_MDL1_MDL2 1006 1245 - -
Glsi02g0144 1250 Pfam ABC transporter transmembrane region 21 281 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g0144 1250 Pfam ABC transporter transmembrane region 683 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g0144 1250 Gene3D - 345 608 IPR027417 -
Glsi02g0144 1250 Coils Coil 1250 1250 - -
Glsi02g0144 1250 CDD ABC_MTABC3_MDL1_MDL2 347 588 - -
Glsi02g0144 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 671 987 - -
Glsi02g0144 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 320 - -
Glsi02g0144 1250 Gene3D ABC transporter type 1, transmembrane domain 67 970 IPR036640 GO:0005524|GO:0016020
Glsi02g0144 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 969 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g0144 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 287 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0144 Glsi-ChrGlsi02 934729 939440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0144 20 589 Calmodulin-binding Proteins AT2G36910 34.201 5.12e-96 333