Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0142 ATGGCAGAAACCGGTATTGTCCCGTTTCCGGGAAGCTTAGACCCCCGAGCGGAAGAGTTCACCCCCAGAAATCCTTATCACGGAGCTCAACCCGCTCCGTTATTCAGGCCCACCCAGCTGTACTACCCGTACGCATGTCCCTACGCACCCACCGGAGGAGTTCAACCGCTCCCCTTTTGCGATGCTGCTCCTGTTGGTGTTCCTTATCCCCAGTTCTCTTCCCCCACGGCGTACGTCAGCCCACTAGCGATGGTGGCGCCACCGGCCGCGCCGTCTTCTACTTCGCCTACTCGGTCGCTGCTGTTGAGCTCTGTGCCGTCAGAGTTGGTAAGCGAGTCCACCTTGAGGAGAGAATTAGAGGTATTTGGGGATGTAAGAGGGGTGCAGATGGAGAGGTTGCGTGATGGAATGGTGACCGTTCATTTCTATGACTTGAGACATGCAGAGATGGCGTTGATGGCGATTCGGAAGCAGCACATGCACCAGCAGACCAGGCTTCGCAATTACTACGCTTCCTTGTTGAAGACACGCAATTCACTGTTCGAAGCCGATTGCTATGCCCCTACCCCTCAGCCACCGCCGGCGCGTGGACAGATAGCCGGCCGTGCCGTGTGGGCCCAATACATTGTGCCGGCGTATAATGCTGTTCCTGAGGGCCAAAATCAGGGGACCATCGTGATTTTCAATTTGGATTCGGAGGTGTCCGCTGAGAGTCTCCGAGAAACTTTCGAGGGTTATGGTCCGGTGAAGGAATTGAGAGATACGCCATCCAAAAAGAATCAAAGGTTCGTGGAGTTCTTTGATATCCGAGATGCGGCTAAGGCTTTGAAAGAAATGAACGGGAAGGAAATTCATGGTAAACCAGTTGTTATTGAATTCAGTAGACCGGGAGGTTATGGCAGGAAGTTCTTCAATGCAGGCGCTGCGCCAACAATCTCCAAAAGCAACGTTGTTCACACGATGCCTTTGAATTTATCACCTCCGTCACCGCCATTACCTCCTTCCCCTCCACCATTGCCGCGTAAAAGCTCACGTCGCTTTGCTCCTGTTGCTCCTTCTCGCTCTCATCTGCCTCACACCCAATTATCGTCCAAGAAATCAACTGTCAACAAGGCAAACACTAATTTGGATAGTGTTAGTAAGAGTGCAATCCCTGCTATGGAAACAGCAATGGCTTCAACAAATTTGAGCGGGGAAGTTGGGAATGGGGTTGAAGAGAAGCATTCGGATGGGCCTCCTCCAACGAGAAATTCCGTTAAAAACTACAGCAGCGAATCTACTGCGGGAAGCACAAAGCACCAACAACCTAGAAGTAGGAATTGGAAGGGAAAGCAAGGAAAGAAGCACGAAACTCGGTTTCTAATAAAAGAAGATGCTATTGTAGAGTCCAGTTCCAAAGATTCCAGAACTACAGTCATGATCAAGAACATACCAAACAAGTACAGTCAGAAGCTACTATTGAACATGCTGGACAACCACTGCATACACTGTAACGAGCAGATGGTCGACGGCGACGGCCAGCCTTTGTCCTCATACGACTTCGTATACCTTCCCATTGATTTCAACAACAAGTGCAATGTGGGATATGGGTTTGTGAATATGACATCTCCAGAGGCAACGCTGAGACTCTATAAGGCATTCCATCTTCAACATTGGGAGGTGTTTAACTCCAGGAAAATTTGCGAAGTCACCTACGCAAGAGTTCAGGGTCTGGAAGCGTTGAAAGAACACTTCAAGAACTCAAAGTTCCCGTGCGAAATAGAGCACTACTTGCCAGTGGTGTTTTCACCACCTCGAGACGGGAGGCAAATGACGGAGCCACTACCAATCGTTGGTCAGAAGCAGCAAGGCGTCGCCCCCAACTCTGAAGTTATTGATGAGATGGAGGGTGAAGATAGGGTAGGAGCTTCTGGCGCCGAACAACATGACATGCATAGCAGCAGCAGCAGCAGCAGCAGCCAAAACGGCGGCGTGGACGTTGGTGATGATGACAGAAGAAGTGGGGAAGTGGCACGGGCGGGCGATGAAACACAAGGGTAA 2040 0.5074 MAETGIVPFPGSLDPRAEEFTPRNPYHGAQPAPLFRPTQLYYPYACPYAPTGGVQPLPFCDAAPVGVPYPQFSSPTAYVSPLAMVAPPAAPSSTSPTRSLLLSSVPSELVSESTLRRELEVFGDVRGVQMERLRDGMVTVHFYDLRHAEMALMAIRKQHMHQQTRLRNYYASLLKTRNSLFEADCYAPTPQPPPARGQIAGRAVWAQYIVPAYNAVPEGQNQGTIVIFNLDSEVSAESLRETFEGYGPVKELRDTPSKKNQRFVEFFDIRDAAKALKEMNGKEIHGKPVVIEFSRPGGYGRKFFNAGAAPTISKSNVVHTMPLNLSPPSPPLPPSPPPLPRKSSRRFAPVAPSRSHLPHTQLSSKKSTVNKANTNLDSVSKSAIPAMETAMASTNLSGEVGNGVEEKHSDGPPPTRNSVKNYSSESTAGSTKHQQPRSRNWKGKQGKKHETRFLIKEDAIVESSSKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQMVDGDGQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEIEHYLPVVFSPPRDGRQMTEPLPIVGQKQQGVAPNSEVIDEMEGEDRVGASGAEQHDMHSSSSSSSSQNGGVDVGDDDRRSGEVARAGDETQG 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0142 679 MobiDBLite consensus disorder prediction 356 383 - -
Glsi02g0142 679 SMART rrm1_1 224 292 IPR000504 GO:0003723
Glsi02g0142 679 SMART rrm1_1 99 167 IPR000504 GO:0003723
Glsi02g0142 679 MobiDBLite consensus disorder prediction 641 658 - -
Glsi02g0142 679 Pfam RNA recognition motif 2 469 579 IPR007201 -
Glsi02g0142 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 173 IPR000504 GO:0003723
Glsi02g0142 679 MobiDBLite consensus disorder prediction 324 343 - -
Glsi02g0142 679 MobiDBLite consensus disorder prediction 320 383 - -
Glsi02g0142 679 FunFam Terminal EAR1-like 1 417 575 - -
Glsi02g0142 679 CDD RRM3_EAR1_like 469 570 IPR034458 -
Glsi02g0142 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 289 IPR000504 GO:0003723
Glsi02g0142 679 SUPERFAMILY RNA-binding domain, RBD 223 548 IPR035979 GO:0003676
Glsi02g0142 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Glsi02g0142 679 MobiDBLite consensus disorder prediction 414 436 - -
Glsi02g0142 679 SUPERFAMILY RNA-binding domain, RBD 88 161 IPR035979 GO:0003676
Glsi02g0142 679 Gene3D - 216 301 IPR012677 -
Glsi02g0142 679 PANTHER RNA RECOGNITION MOTIF-CONTAINING 464 597 - -
Glsi02g0142 679 MobiDBLite consensus disorder prediction 601 679 - -
Glsi02g0142 679 MobiDBLite consensus disorder prediction 398 449 - -
Glsi02g0142 679 Gene3D - 401 579 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0142 Glsi-ChrGlsi02 924927 927724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0142 225 295 Eukaryotic Initiation Factors Gene Family AT2G23350 36.000 4.95e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0142 02 924927 927724 Glsi02g0142 02 924927 927724 ECH