Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0135 ATGGGCGAGGAGCAACTGTCCACATTGCTGGAGGATCTTGCATTAAAGTACAGGACAAGACCCACACTATTATTCATGGCTTACACATCCATGACTGCAAAAGAGGAGAGTGGGTATGTCAGGGACTCCCCTGACCATTCTAGCTTTAGTTCTAAATCGGACGGTGATGGGATGCTAATCTGCGGTGGGAGCCACATTTGGGGGCATCGTTGCACATTATCAAATTGCTTTGATGGCACCATTTCCAACAATTACATGACGCACCATGAAAAAGTTATTCTTTTGGGCCATAGCGATGTCTATGAAAAGGACAAGAATATGCAGGTAACCGTAGCCTTCAACCATTTTGGTGAAGGGCTTGGGGGGAGAATGCCAAGGTTTGGATACCTTCATGCTGTTAACAACGATTACACCCATTGGAAACAGTACGCAATAGGTGGGAGCGCATGCCCTACCGTTTTCAGCCAAGGCAACAGATTTCTTGCTCCGGATGACGGACAACACAAAGAGGTGACCAAACACTTTGATGCATCGGAGATCGAGTGGAAGAAATGGAATTGGAGGTCGGAAGGATATCTAATGTTGAAGGGAGTCTTCTTCAGGAGGTCTGGAGCAGGAGCATCTTCAATTTATGCGAAGGCGTCAAGCTTGGCGCCGCGACCATGTATACTTGTGAGTTCAATGACGGCAGCAGCTGGGGCACTTGAATGCAAAAGGAGCTGA 723 0.4758 MGEEQLSTLLEDLALKYRTRPTLLFMAYTSMTAKEESGYVRDSPDHSSFSSKSDGDGMLICGGSHIWGHRCTLSNCFDGTISNNYMTHHEKVILLGHSDVYEKDKNMQVTVAFNHFGEGLGGRMPRFGYLHAVNNDYTHWKQYAIGGSACPTVFSQGNRFLAPDDGQHKEVTKHFDASEIEWKKWNWRSEGYLMLKGVFFRRSGAGASSIYAKASSLAPRPCILVSSMTAAAGALECKRS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0135 240 SUPERFAMILY Pectin lyase-like 42 237 IPR011050 -
Glsi02g0135 240 PANTHER PECTATE LYASE 18-RELATED 35 239 IPR045032 GO:0030570
Glsi02g0135 240 Pfam Pectate lyase 80 160 IPR002022 -
Glsi02g0135 240 PRINTS Pollen allergen Amb family signature 214 237 IPR018082 -
Glsi02g0135 240 PRINTS Pollen allergen Amb family signature 54 75 IPR018082 -
Glsi02g0135 240 PRINTS Pollen allergen Amb family signature 185 209 IPR018082 -
Glsi02g0135 240 SMART amb_all 1 166 IPR002022 -
Glsi02g0135 240 Gene3D - 29 236 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0135 Glsi-ChrGlsi02 878219 879110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0135 39 239 Polysaccharide Lyase AT5G63180 65.741 3.15e-87 263