Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0120 ATGGATAATGGTTTCTCTTCTCCTCGACGTGATACCTTTCCGGCTGGTCTGCGAGTTCTCGTCGTCGACGATGACCCAACATGGCTCAGGATCCTTGAAAAGATGCTCAAGAAGTGCTCCTACGAAGTGACTACATGCTGTTTAGCAAGAGAAGCTCTAAACTTGCTTCGTGAGAGAAAAGATGGATATGACATTGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTAGAGCATGTTGGACTCGAGATGGATCTTCCTGTCATTATGATGTCTGTAGATGGAGAAACAAGTAGGGTGATGAAAGGCGTTCAACATGGAGCATGTGATTATCTCCTGAAGCCTATACGGATGAAAGAACTTCGAAATATATGGCAACATGTATTTAGAAAGAGGATACATGAGGCAAGAGAATTTGAAGGTCACGATGGCTTCGAGGGCATTCACTTAATGAGAAATGGATCAGATCAGTCTGATGATGGGATCTTTTTTGCTGTAGAAGATATGACCTCAATGAAGAAAAGAAAAGATGTAGATAACAAACATGATGACAAAGAATTTGTAGATCCATCTTCCACGAAGAAAGCTAGAGTTGTTTGGTCTGTGGATCTTCATCAGAAATTTGTTAAAGCTGTGAATCAGATTGGGTTTGATAAAGTTGGTCCCAAGAAAATACTTGATTCGATGAATGTTCCTTGGCTAACCAGAGAAAATGTTGCTAGCCACTTACAGAAATACCGGCTCTACTTGAGTAGGTTGCAGAAAGAAAACGATCAGAAATCGTCCTCAAGTGGGATTAAGCATTCAGATTTACCTTCAAAAGAACCTGCAGGAAGTTTTGGTTTTCAAAACTCAATAAACAGGCAACAAAATGAGGTTGCAATTGACAGCTACAAATATTCAGATGGAACATTACAAAGTCATAACTCGGACACTACAAGTCATGAAGGTGACCTCAAGGGAATCGTTTCAGAGTCTACAACAGACAAAAGAAGAGCATTGACTGGCAACATTCCTGATACAAAGATAAGAAGGAATTCACAGATGGGCCTTAACCATTCTTTTGCACCTCTGGAGTCAGAAGGAATCCCAGCAGTATTTGATTGCACAATCCCAACGAAGTACACCTGGAGTGAAGCTCCAGAAATCCAACTCATAAAAGAACGTAAGTCACTTCTTCAGTTGGAGGATAGCTTCAGCCAGTTACCATTACATGTTACGCAGCCCCACATTCAGGTAGATCAATCACAGTCAATTGCTTCAGTTAGTTCCGACCCCTGTATAACAGAGGGAGAGATTGCTGCCTGTATTAAAACGAAGCCCTTTCATGCCAGTTCTGGGAATTCAATAGGGAGCGCAGTTGACTCCTTTTCTATTCAATCCAAGAGCCATATGGTGAGTGATCAATTTTCAGAGCCTGTTCCAACAAAAAATTTGGGCATGAAAACACAGGTCTTTAATCTCAGTTGCATTTCTGATCTGGATTTTAACCCCAAAAACCTACTTTTGGGTGGTGACGTAGCTTCCGCACCTTTAGACGAGGACTTGCAATTTTGTTGGCTGCAAGGTGAATGCTATAATATGAACTGGGGACTGCAGAATGGAGAGATGTCAGAGTATTATGATCCAGGGCTTGTAGCGGAAGTTCCAACTCAATTATATGATTCATCAGACTATTCAGTAGTAGATCAAGGACTATTCATAGCATAA 1722 0.4117 MDNGFSSPRRDTFPAGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFEGHDGFEGIHLMRNGSDQSDDGIFFAVEDMTSMKKRKDVDNKHDDKEFVDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDSMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDLPSKEPAGSFGFQNSINRQQNEVAIDSYKYSDGTLQSHNSDTTSHEGDLKGIVSESTTDKRRALTGNIPDTKIRRNSQMGLNHSFAPLESEGIPAVFDCTIPTKYTWSEAPEIQLIKERKSLLQLEDSFSQLPLHVTQPHIQVDQSQSIASVSSDPCITEGEIAACIKTKPFHASSGNSIGSAVDSFSIQSKSHMVSDQFSEPVPTKNLGMKTQVFNLSCISDLDFNPKNLLLGGDVASAPLDEDLQFCWLQGECYNMNWGLQNGEMSEYYDPGLVAEVPTQLYDSSDYSVVDQGLFIA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0120 573 FunFam Two-component response regulator 17 187 - -
Glsi02g0120 573 CDD REC_typeB_ARR-like 19 133 - -
Glsi02g0120 573 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Glsi02g0120 573 SMART REC_2 17 129 IPR001789 GO:0000160
Glsi02g0120 573 FunFam Two-component response regulator 195 258 - -
Glsi02g0120 573 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Glsi02g0120 573 SUPERFAMILY CheY-like 16 140 IPR011006 -
Glsi02g0120 573 Gene3D - 195 258 - -
Glsi02g0120 573 Gene3D - 17 179 - -
Glsi02g0120 573 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 305 IPR045279 GO:0009736
Glsi02g0120 573 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Glsi02g0120 573 MobiDBLite consensus disorder prediction 261 288 - -
Glsi02g0120 573 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Glsi02g0120 573 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0120 Glsi-ChrGlsi02 813561 816945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0120 11 265 Response Regulator Gene Family AT2G25180 54.545 3.86e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi02g0120 Response_reg 7.9e-25 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0120 02 813561 816945 Glsi02g0120 02 813561 816945 ECH