Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0112 ATGTCTGTAAATATGCATTTGCAATGGCAACATATTATTGACAAGATCTATATAGGGTCATTTTCATCTCTTATTTATATTTACTCCTATGTCGGTACTCGACCAGTTTATGGTGGAACTGTGCCTGTTGAACAGCTTAAATTTGCCCATCTTGGCTGTGAGATTGTGACCTTATTCTGGAAGCACTTCAGCTATTGCAGCGAAGATGCCAACCAATGGGCGGATACGGCTTGCTTGTTGGCAGCATGTCTGAATTTTGATCCTTTTTTGTCAGGTGAGAAGAAATTTCTTGATATCCCTCAGCGTTATGTGAATAGAAGAGTCGCTCGAGGGCTGAAGAAAACAAAGCAGAACTGGAATCCTAAGTACAATTTTGCAATGAATTTTGGATCTCTCTTTTTCCAAGTGAATGGAACGGCCACTGTTCTTGCGGCCCTGGCCCCCTTTCCCGTTAGGTCACCGGGATCCGAATCCAAGTGCAGCTTTATAAACTTTCCGGAAGTTGAACATGTGGATCATTTAGTAATGGAATTCAACTGTTGGAAGGATGCCGAGGATTCATTCTATATATGCATGTACCAATACTCTTTTAGTTACTCACGCCTGGAGAAGGGACATATCAAAGGTGGGAAAATGAGAATGCCGCCAATGAACATTAATGTGGCCTTGACTGGAGGAGGCACACAACCATCCAATGCAACCCGTTCAGCACTCCTTCTTCTTCCTTCTCTTCCAGCTCAAATAAAGCCACGTGCTTGCTTCATACTTCCACAGAGAGCGGTGGGACTCACTCCGATCATGGTTATTATGGATACTGTGTTGGGAATAGTTAATGCAGCATTCTTCATTGCGATACTGATATGGGTTTTGCTTGACAGTTTGAGAGAAAGCAGACGTAATGGCGTTGTATATTTGAAAAATGTACCGAAACGATTTGCTGTTTTTACCACAATCACACTGGTCTCTGATGCTATTATTTCAGTCTTGAACTTTGCTTTTGCCTTTCATGAATACAAGAGTCGAAAAATCATATCCTATAACTCTGTTTCCTTGGGTTTAACTTGGGTTTTAGCAACCGTAGTTTCGTTATATTCAATGAAGAGAATACTTCGGCAGAACAAAAGGTGGCCCCTTGTCTTAATTCTCTGGTGGTTATTTGCCGCTATTTTGGTTTCAATCTCGGTTTCCATGAAACTCGTCAAAAATTTCAAATCCATGAAGTTGTCGTTTTTTCTATCAGAAGATAACATAGTTGATTTCGTTTCCTTTCCTCTGCTGTTACTCCTTTGTTTCAATGCTCTGCCGGCTCTACGGGCGAGGAAAGACAACGATATGGAACAACTCTTACTTCAAAAGGAAGTAGAACCCTCATTGGAAGAAGATGAGGAGGCATTCACAAATGCTGGGATATGGAGCCAACTCACATTCCAATGGCTGAACCCCATTTTTAGGAGGGGCCAGATTCAAAAACTTGATCTTGCTCATATTCCTTCAGCTACTCAATCTGAAACGGCAGAAAATGCTTCTTCGATGTTGGAAGAATCACTCCGAAAACAAAAACTTGAAGCGGGTTCCTTGACGAAAGCTATTGCCCAGTCAATCTGGAAATCCTTGACCTTAAATGCAGTGTTCGCAGGAGTAAACACAATTGCCTCCTATATGGGTCCCTTGTTGATCACAAACTTTGTGAATTTCTTATCGGGAAATTATGATGATTCAAGCATCCACTATGGGCTGATTCTTGCATTCATTTTCTTCTTCGCGAAGACTGTGGAATCACTAACTCAAAGGCAATGGTACTTTGGTGCTCAAAGAATAGGAATTCAAGTGCGTGCAGCTCTCACAGTGCTGATTTATAGCAAGTCATTATCGATCAAGTGTGGTGGACAAGCAAATGGTAAAATCATAAATCTGATCAATGTGGATGTTGAAAGAATTGGGGACTTCTGCTGGTATATTCATGGAGTATGGTTGCTTCCGGTTCAGGTAGTTTTGGCCTTGGTCATCTTATACAGAAATTTAGGTTTTACGCCTTCCATTGCTGCTCTTGCTGTCACAATTTTGGTTATGGTGTGCAATACGCCCATGGCCAATATGCAAGAAAGTCTTCACTCCAAGATCATGGAAGCTAAGGATTCCAGAATCAAGGTGACTTCAGAGACGCTAAAGAACATCCGAATTTTGAAATTGCATTCCTGGGAATCCACATTCTTAAAGAAACTCCTCCAACTTAGGGAAACTGAGAGGAGCTGGCTGCAGAAATACCTCTATATATGCTCAGCGGTGACCTTTCTATTCTGGACATCTCCAACTTTCGTTTCTGTTGCCACTTTTGGTGTCTGTATAATGGTAAAAACAGAACTAACAGCAGCTACGGTCCTCTCCGCTTTAGCAACTTTTCGAATTTTACAAGAACCAATCTACAACCTACCTGAGCTTATTTCCATGATAGCTCAAACTAAAGTCTCCATTGATAGAATCCAGGAGTTCATTAAAGAAGAGGATCAAAAGCAATTCATGATTAAGCATATTTCAAAATCTTCTTCTGAAATTGCCATTGAAATCAAGACAGGTGAATATTCATGGGAAGCAGATGATCAAAGCCACAAGAAACCAACCATTCAAATTACGAAAATGTTGAAGATAGAGAAAGGTCAAAAGGTAGCAGTTTGCGGGTCTGTGGGCTCTGGCAAATCAAGCCTACTCTGCTGTATGCTTGGTGAGATTCCAAGGATTTCGGGGGCAGGAATCAAGGTCTACGGAACCAGAAGTTATGTACCCCAAAGTCCTTGGATTCAGTCTGGGACTGTAAGGGAAAATGTATTGTTTGGCAGGCAAATGAATATGGACTTCTATGAGAGTGTTTTGGAAGGCTGTGCTCTACACCAGGATATCAACATGTGGGCAGATGGAGAGTTGACCATGGTGGGGGAGAGAGGCTTAAACTTAAGTGGGGGCCAAAAACAGAGAATTCAACTGGCAAGGGCTGTTTACAATGATTCGGATATTTATTTCCTAGACGACCCTTTTAGTGCTGTTGATGCGCATACTGGAACACATTTGTTTAAGAAATGTCTCATGCAACTTTTATCTGAGAAAACCGTTGTTTATGCTACCCATCAACTGGAATTTTTGGAAGCTGCAGATATTATCTTAGTAATGAAAGATGGAAAGATAGTTGGGTCGGGAAAGTATAAAGATCTGACAGCATGTCCTGGTTGTGAACTTGTTGAACAAATGGCTGCTCATAAAGAAACAATGAAGCAAATTAATCCATGCCAAGATAAGTCCAAAAGTTGTAGACCCTGTCAAATAAATCAAATTGAAGTTGCTGAAGAAAATTTTAATAAGACCCTCGAGAACCAGAAGCATTTTGAGAAAAACAAAGAAGAGGAAGCAGAGACAGGACGAGTTAATTGGAGTGTTTACTCAACCTTTGTCACATTTGCTTATAGAGGCGCATTTGTTCCGGTTATTCTTCTTTGCCAAATTCTCTTTCAAGGAATGCAGATAGGAAGCAATTACTGGATTGCCTGGGCTGCAGAACAGAGGGGCAGTGTCAGCAAAGAGCAGCTTATAGGGACATTTGTTCTACTATCTGGTGGCAGCTCCATCTTCATACTTGGAAGGGCTGTCTTAATGGCAACAGTCGCCGTGGAGACAGCTCAACGTCTTTTCCATGAAATGATTTCATCAGTTTTCAGGGCGCCTGTTTCCTTTTTTGATACCACACCTTCAAGCCAAATCCTAAATAGGTCTTCTACGGATCAAAGTACAGTAGACACAGATGTACCATACAGATTAGCTGGACTTGTATTTGCACTTATCCAGTTACTGAGTATCATCATCCTAATGTCCCAGGTTACTTGGCAAGTCATTCTTCTCTTTCTTATCGTGCTTGCCATCTCCATCTGGTATCAGGCTTATTACATCACTACAGCCAGAGAATTAGCCAGGATGATAGGGATTCGAAAGGCTCCAATCTTGCATCACTTCTCGGAATCAATTGTCGGGGCTGCCACAATCCGTTGTTTCAATCAAGAGCAAAGATTCTTAACAAAAGTTATGGCTCTGATTGATGATTATTCTCGTGTAGCCTTTCACAATTATGCCACCATGGAATGGTTGTCAGTCCGAATAAATTTTCTCTTTAACCTGGTCTTCTTTTTTGTTCTCATCATCTTGGTTACTCTGCCAAGGTCTGCCATTGATCCCAGCTTGGCGGGTTTGGTAGCTACTTATGGTTTGAACTTGAACGTTCTTCAGGCTTGGGTGATATGGAATCTTTGCAATGTAGAGAATAAAATGATATCAGTTGAGAGAATACTGCAGTTCACTAAGATACCAAGTGAAGCTCCATTAATAATTCAAGATTGTAGGCCCGAGCCAAAGTGGCCAATGGAAGGAAAAATTGAACTTCATAACCTTCACATACAGTATGATCCTGCTGCTCCAATGGTTCTCAAAGGTGTCACTTGCACCTTCCCAGGGCAAATGAAAATTGGAATTGTAGGCAGGACAGGGAGTGGAAAATCCACTTTAGTGCAAGCTCTCTTTCGAGTGGTGGAGCCTTCAGTAGGAAGTATACGCATTGACGGTGTAGATATCTGCAAGATTGGTCTGCAGGATTTAAGATTAAGGCTTGGTATAATTCCTCAAGATCCAACCTTGTTTCAAGGTACTGTAAGGAACAACTTGGATCCTCTGGAACAACATTCAGATCAAGAACTTTGGGAGGTGCTCAGTAAGTGCCATCTTGCTGAAATAGTGAGGAAGGATGCAAAGCTTCTTGATGCATCAGTCGCTGAGAATGGAGAAAATTGGAGTGTTGGACAAAGGCAGCTTGTTTGCCTTGCCAGACTGCTATTGAAGAAAAGAAAAATTTTGGTCCTAGATGAGGCAACTGCATCCATCGACACTGCAACTGATAATTTAATTCAAAAGACCATTAGGGAAGAGACTAGTGGATGCACAGTCATTACAGTGGCACACAGGATCCCTACAGTAATTGATAATGACTATGTATTAGTCCTTGATGAAGGGAAGATTGCAGAGTTTGATCGCCCATCTCAGTTGCTACAGAACAATTCTTCATCATTCTCGAAGCTGGTGTCTGAGTTTTTGAGAAGATCATCCCGAAGTAATTGCCAAAAGGATATAGAATGA 5166 0.4148 MSVNMHLQWQHIIDKIYIGSFSSLIYIYSYVGTRPVYGGTVPVEQLKFAHLGCEIVTLFWKHFSYCSEDANQWADTACLLAACLNFDPFLSGEKKFLDIPQRYVNRRVARGLKKTKQNWNPKYNFAMNFGSLFFQVNGTATVLAALAPFPVRSPGSESKCSFINFPEVEHVDHLVMEFNCWKDAEDSFYICMYQYSFSYSRLEKGHIKGGKMRMPPMNINVALTGGGTQPSNATRSALLLLPSLPAQIKPRACFILPQRAVGLTPIMVIMDTVLGIVNAAFFIAILIWVLLDSLRESRRNGVVYLKNVPKRFAVFTTITLVSDAIISVLNFAFAFHEYKSRKIISYNSVSLGLTWVLATVVSLYSMKRILRQNKRWPLVLILWWLFAAILVSISVSMKLVKNFKSMKLSFFLSEDNIVDFVSFPLLLLLCFNALPALRARKDNDMEQLLLQKEVEPSLEEDEEAFTNAGIWSQLTFQWLNPIFRRGQIQKLDLAHIPSATQSETAENASSMLEESLRKQKLEAGSLTKAIAQSIWKSLTLNAVFAGVNTIASYMGPLLITNFVNFLSGNYDDSSIHYGLILAFIFFFAKTVESLTQRQWYFGAQRIGIQVRAALTVLIYSKSLSIKCGGQANGKIINLINVDVERIGDFCWYIHGVWLLPVQVVLALVILYRNLGFTPSIAALAVTILVMVCNTPMANMQESLHSKIMEAKDSRIKVTSETLKNIRILKLHSWESTFLKKLLQLRETERSWLQKYLYICSAVTFLFWTSPTFVSVATFGVCIMVKTELTAATVLSALATFRILQEPIYNLPELISMIAQTKVSIDRIQEFIKEEDQKQFMIKHISKSSSEIAIEIKTGEYSWEADDQSHKKPTIQITKMLKIEKGQKVAVCGSVGSGKSSLLCCMLGEIPRISGAGIKVYGTRSYVPQSPWIQSGTVRENVLFGRQMNMDFYESVLEGCALHQDINMWADGELTMVGERGLNLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMQLLSEKTVVYATHQLEFLEAADIILVMKDGKIVGSGKYKDLTACPGCELVEQMAAHKETMKQINPCQDKSKSCRPCQINQIEVAEENFNKTLENQKHFEKNKEEEAETGRVNWSVYSTFVTFAYRGAFVPVILLCQILFQGMQIGSNYWIAWAAEQRGSVSKEQLIGTFVLLSGGSSIFILGRAVLMATVAVETAQRLFHEMISSVFRAPVSFFDTTPSSQILNRSSTDQSTVDTDVPYRLAGLVFALIQLLSIIILMSQVTWQVILLFLIVLAISIWYQAYYITTARELARMIGIRKAPILHHFSESIVGAATIRCFNQEQRFLTKVMALIDDYSRVAFHNYATMEWLSVRINFLFNLVFFFVLIILVTLPRSAIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLIIQDCRPEPKWPMEGKIELHNLHIQYDPAAPMVLKGVTCTFPGQMKIGIVGRTGSGKSTLVQALFRVVEPSVGSIRIDGVDICKIGLQDLRLRLGIIPQDPTLFQGTVRNNLDPLEQHSDQELWEVLSKCHLAEIVRKDAKLLDASVAENGENWSVGQRQLVCLARLLLKKRKILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDYVLVLDEGKIAEFDRPSQLLQNNSSSFSKLVSEFLRRSSRSNCQKDIE 1721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0112 1721 CDD ABC_6TM_ABCC_D2 1156 1446 IPR044726 GO:0140359
Glsi02g0112 1721 FunFam Multidrug resistance-associated protein 4 838 1098 - -
Glsi02g0112 1721 SMART AAA_5 1497 1699 IPR003593 GO:0016887
Glsi02g0112 1721 SMART AAA_5 884 1058 IPR003593 GO:0016887
Glsi02g0112 1721 FunFam ABC transporter C family member 3 1454 1706 - -
Glsi02g0112 1721 ProSitePatterns ABC transporters family signature. 983 997 IPR017871 GO:0005524|GO:0016887
Glsi02g0112 1721 CDD ABCC_MRP_domain2 1469 1689 - -
Glsi02g0112 1721 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 855 1081 IPR003439 GO:0005524
Glsi02g0112 1721 SUPERFAMILY ABC transporter transmembrane region 533 834 IPR036640 GO:0005524|GO:0016020
Glsi02g0112 1721 CDD ABC_6TM_ABCC_D1 540 827 IPR044746 GO:0140359
Glsi02g0112 1721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1463 1697 IPR027417 -
Glsi02g0112 1721 Gene3D - 877 1109 IPR027417 -
Glsi02g0112 1721 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 466 1710 - -
Glsi02g0112 1721 FunFam ABC transporter C family member 5 1119 1452 - -
Glsi02g0112 1721 SUPERFAMILY ABC transporter transmembrane region 1158 1451 IPR036640 GO:0005524|GO:0016020
Glsi02g0112 1721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 880 1072 IPR027417 -
Glsi02g0112 1721 Gene3D - 1454 1707 IPR027417 -
Glsi02g0112 1721 Pfam ABC transporter transmembrane region 539 806 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g0112 1721 Pfam ABC transporter transmembrane region 1174 1398 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g0112 1721 CDD ABCC_MRP_domain1 853 1058 - -
Glsi02g0112 1721 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1471 1705 IPR003439 GO:0005524
Glsi02g0112 1721 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 542 819 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g0112 1721 Pfam ABC transporter 880 1010 IPR003439 GO:0005524
Glsi02g0112 1721 Gene3D ABC transporter type 1, transmembrane domain 1117 1452 IPR036640 GO:0005524|GO:0016020
Glsi02g0112 1721 Gene3D ABC transporter type 1, transmembrane domain 513 838 IPR036640 GO:0005524|GO:0016020
Glsi02g0112 1721 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1158 1434 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g0112 1721 FunFam ABC transporter C family member 10 522 835 - -
Glsi02g0112 1721 Pfam ABC transporter 1488 1636 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0112 Glsi-ChrGlsi02 762878 773470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0112 1469 1718 Calmodulin-binding Proteins AT2G36910 31.250 8.84e-32 134