Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0106 ATGGCTTCCGTTGCCGGATCAAACTGTATCGCTTTCAAAGCCGCCGGCGTCTCACACAAGTTGGGAGGCTTCTCTGACAGGAAATTCGGTCATCTTCACCAATGGTCTCCGATTCGTGGATCCCAAGTGAGTCAGCTCCGTCCCCTTTTGGGTCTCCACTGTAGATCCAAAAGTTCATTCGGATCGTCTGGTATAAGAGCTCAGGTTGCCACCCTTGAGGAAGCAGGAGCTGGAGCAGCCCAAAATGTGGAAGCGCCCGTTGTTGTAGTGACTGGAGCCTCCAGAGGTATTGGCCGAGCAATTGCATTGTCTTTGGGTAAAGCAGGTTGCAAGGTCCTGGTTAATTATGCTAGATCATCCAAGGAAGCAGAGGATGTTTCCAAGGAGATTGAGGCATGCGGTGGACAAGCTCTTACATTTGGGGGAGATGTTTCAAATGAGGCAGATGTGGAGTCCATGATTAAAACAGCAGTTGATGCTTGGGGAACTGTTGATGTGTTGGTAAACAATGCAGGAATCACTAGGGATGGTTTGTTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATCTGAATCTCACTGGTGTTTTTCTTTGCACCCAAGCAGCAGCGAAGATTATGATGAAGAAAAGGCAGGGAAGGATAATCAACATTGCTTCAGTTGTTGGTCTAGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAAACTGTTGCAAAGGAATATGCTAGCAGAAACATCAACGTCAATGCAGTTGCTCCTGGGTTTATTGCATCTGACATGACTGCCAAGCTAGGACAGGACATTGAGAAAAAGATTTTGGAGACAATCCCCTTAGGAAGATATGGGCAACCCGAAGAAGTAGCTGGACTGGTCGAATTCTTGGCGCTTAATCCTGCTTCCAGTTACATCACTGGGCAGGTGTTCACTATTGATGGAGGAATGGTGATGTAA 987 0.4661 MASVAGSNCIAFKAAGVSHKLGGFSDRKFGHLHQWSPIRGSQVSQLRPLLGLHCRSKSSFGSSGIRAQVATLEEAGAGAAQNVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEDVSKEIEACGGQALTFGGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKRQGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNINVNAVAPGFIASDMTAKLGQDIEKKILETIPLGRYGQPEEVAGLVEFLALNPASSYITGQVFTIDGGMVM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0106 328 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 222 250 IPR020904 GO:0016491
Glsi02g0106 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 87 328 IPR036291 -
Glsi02g0106 328 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 85 328 - -
Glsi02g0106 328 CDD BKR_SDR_c 87 327 - -
Glsi02g0106 328 PRINTS Glucose/ribitol dehydrogenase family signature 162 173 IPR002347 -
Glsi02g0106 328 PRINTS Glucose/ribitol dehydrogenase family signature 235 254 IPR002347 -
Glsi02g0106 328 PRINTS Glucose/ribitol dehydrogenase family signature 87 104 IPR002347 -
Glsi02g0106 328 PRINTS Glucose/ribitol dehydrogenase family signature 289 309 IPR002347 -
Glsi02g0106 328 PRINTS Glucose/ribitol dehydrogenase family signature 209 225 IPR002347 -
Glsi02g0106 328 PRINTS Glucose/ribitol dehydrogenase family signature 256 273 IPR002347 -
Glsi02g0106 328 Pfam Enoyl-(Acyl carrier protein) reductase 92 326 - -
Glsi02g0106 328 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 88 327 IPR011284 GO:0004316|GO:0006633|GO:0051287
Glsi02g0106 328 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 86 271 - -
Glsi02g0106 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 173 IPR002347 -
Glsi02g0106 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 235 254 IPR002347 -
Glsi02g0106 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 215 223 IPR002347 -
Glsi02g0106 328 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 82 327 - -
Glsi02g0106 328 Gene3D - 85 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0106 Glsi-ChrGlsi02 733855 737560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0106 2 328 Acyl Lipid Metabolism Gene Families AT1G24360 65.854 7.34e-153 430