Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0104 ATGACGCAACAAATGGAGTCCGATTCAGACTCAGACGGATCTCATGTCTCTGCGACGCCCCCCAGAGAAGAATGTCCATTGTCATTGCCTGCACCGCCGCCGCAGCCACCTGTTCTCGTCTCCAAGAAATTCAAAGTTTCTTCCTTGTCCAGCTCGAAATCTTCAAAATCCAAAATACGCCCTTCGAGACCAACCAAAACGCCGTCCAAACCGGAATCAACTCAAGAAGAAATGCCCTCTAACTCCTTTTTCCTCCCTACTTTACCATTCCAAATTCGTCGACCTTCTGAACGTGTTCCCGTACTGTCAACTGCCCAGTCCATTGAAAACCTCCCAGCTGGGTATTTCTCCAAATCCACTTCGTTCTCGAAAATTCGAAGGCCCTTCCTCAACTTTGTAAATTCTTTTGAAAATGAACCACCTTTTGATTCTGTATCTAATCCAGCCCCCAAGAACGAGAGTAATGAGACTTACTGTCGGCAGGGTGATTCTATCCCAGCAGAAGTAGAACGCGATGATCTAAGTGCTAGGAGCTTGGTAAAAGTAGGAAAGAGATATCCTAATCTGATAGGAGCTAATTTGCCAGCGCCACCTGTTAAGCTGCGAAAATGTGTTGGTGACGGCAACTTTGTGAGGTTGAACATGAATAACAAGAGGCGGAAGTTTCTGAGCAAGGGGAGAAAGAAAAATTTTATATCTAGTGGACGTAGAAGTTACAGGAGAAATAGACGCAAATCGAAGCATGAAGGACAGGATCAAATGCAGTCGGTCTTTGAGTCTGACGAGGATGCGTTTGTCGAACAGACGGCACAACAGAAGTCCAGGGATTCTTGTGGAACAAAAGAGTTTAATTCCAAAATTATTGAAGAGGCTGTGTCAGCAGTTCAAGATGACCCATCCGATGAGAACTTGGTGAACTTGCTAAAATTAGTTTATGGTTATGACTCTTTTCGGGATGGGCAGTTGGAGGCAATCAAGATGGTACTTGCTGGGCAGTCGACAATGCTTATTTTGCCCACTGGTGCAGGAAAGTCGCTGTGTTATCAGGTACCTGCAATGATTTTACCTGGGGTCACCCTGGTTGTCAGTCCATTGGTAGCCTTAATGATTGATCAACAAAGACAATTGCCTCCTATGATTAATGGTCGTCTTCTATGCAGCAGTCAGACACCTGAAGAAGCCTCTGAGTCACTGAAGCAGCTTCAACAAGGTGCAATAAAGGTGCTTTTTGTTTCACCAGAGAGGTTCTTGAATGAAGAGTTTCTGTCAATAATTCGTACTACTTCAGCTGTATCTCTTGTTGTGGTTGATGAAGCACACTGTATATCTGAATGGTCCCACAATTTTCGCCCTTCATTCATGAGGCTAAGAGCATCCTTGCTCCGCAACAAGCTCAATGTAGGCTCTATCCTTGCAATGACAGCAACGGCTACAACCACAACTCTAGATGCCATCATGTCTGCTCTAGATATTCCTTGCACAAATCTTATTCAGAAGACACGGTTAAGGGACAATATGCATTTATCAGTATCCTTAACCAGAAATAGGCAAGTTAGAACGAAAGACCTATTGATGCTGATCAAGTCTTCTCCATTTGCGGAAGTTCAAAGCATAATCATATACTGCAAATTTCAGTCTGAAACTGATCTAATTAGCAGATGCCTGAATGACAACAGTATCTCTGCAAAGAGTTACCATAGCGGTATCACTGCAAAGGAACGCAGCTATGTACAGGAGTTGTTTAGTTCCAACAAGATTAGAGTGGTTGTTGCAACAGTGGCATTTGGCATGGGACTAGACAAAAGGGATGTCGGAGCTGTAATTCATTACAGTCTGCCTGAAAGTCTGGAGGAGTATGTACAGGAGATTGGACGAGCTGGAAGGGATGGCAGGTTGTCCTTTTGCCATCTATTTTATGATGAAGAGACATATGTCAAACTCCAAAGTCTAATGTACAGCGATGGAGTAGATGAATATGCAGTGAACAAATTTCTGTGCGAAGTATTCCCTGCTGATAAAATTTCCCATGGGCAAATATGTTCCTTGATCAAAGAACCTGCTTCACGCAGGTTTGACATGAAAGAAGAGGTGATGCTGACACTTTTGACACGCTTGGAGTTGGGTGATGTGCAGTACATACATTTACTTCCACAGATAAATGCAACTTGCACTTTGACTTTTCACAAGACTCCCCCGCTGTTGCTTGCCCAAAAAGTTTCTGCTGTTGTTCAAATTCTAAAAAGGTCTGAAAATAAGCAAGGGCTATATATCTTTGACATGCCCACTGTGGCGAACGACATGGGGGTTACAGCTGTTGAATTATCAAATCAATTGCACGATCTAAAGCTGATTGGAGAAATAACCTATGAGATGAAGGATTTGGCCTATTGTTATAGGATTGTTAAAGTCCCAACTGATTTCTTTTTGCTGTCAACAGACCTTACACAATGGCTATATGAGGTTGAAAGACGGAAGGTATGGAAACTGAATGCAATGTTTGATGCTGCATATTTTGCAGTAAATATTTGCGATAAGACGCATGGTTGCAGTGGTTCCAATCACACACCATGCTTGCAAAGGAAGATAACAGATTACTTTGCTGGAGTTGATAATAACTGCTATTCCAAGAATATGGTTCAAAGCAGCCCTTTCTTGCGAGCTGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCCAAATTCACACCTAGAGCCATTGCAAGGATAATGCATGGAATTGCAAGCCCAGCCTATCCTTCTACAGCTTGGTCTAAAACTCATTTCTGGGGAAGGTATAGGAATGTGGACTTTCAGGTGGTGATGGAAGCAGCAAAGTCAGAACTCAAGAATTTTGTTGGAAAAGACACGCTCTAG 2874 0.4301 MTQQMESDSDSDGSHVSATPPREECPLSLPAPPPQPPVLVSKKFKVSSLSSSKSSKSKIRPSRPTKTPSKPESTQEEMPSNSFFLPTLPFQIRRPSERVPVLSTAQSIENLPAGYFSKSTSFSKIRRPFLNFVNSFENEPPFDSVSNPAPKNESNETYCRQGDSIPAEVERDDLSARSLVKVGKRYPNLIGANLPAPPVKLRKCVGDGNFVRLNMNNKRRKFLSKGRKKNFISSGRRSYRRNRRKSKHEGQDQMQSVFESDEDAFVEQTAQQKSRDSCGTKEFNSKIIEEAVSAVQDDPSDENLVNLLKLVYGYDSFRDGQLEAIKMVLAGQSTMLILPTGAGKSLCYQVPAMILPGVTLVVSPLVALMIDQQRQLPPMINGRLLCSSQTPEEASESLKQLQQGAIKVLFVSPERFLNEEFLSIIRTTSAVSLVVVDEAHCISEWSHNFRPSFMRLRASLLRNKLNVGSILAMTATATTTTLDAIMSALDIPCTNLIQKTRLRDNMHLSVSLTRNRQVRTKDLLMLIKSSPFAEVQSIIIYCKFQSETDLISRCLNDNSISAKSYHSGITAKERSYVQELFSSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSFCHLFYDEETYVKLQSLMYSDGVDEYAVNKFLCEVFPADKISHGQICSLIKEPASRRFDMKEEVMLTLLTRLELGDVQYIHLLPQINATCTLTFHKTPPLLLAQKVSAVVQILKRSENKQGLYIFDMPTVANDMGVTAVELSNQLHDLKLIGEITYEMKDLAYCYRIVKVPTDFFLLSTDLTQWLYEVERRKVWKLNAMFDAAYFAVNICDKTHGCSGSNHTPCLQRKITDYFAGVDNNCYSKNMVQSSPFLRADIKVFLQSNSQAKFTPRAIARIMHGIASPAYPSTAWSKTHFWGRYRNVDFQVVMEAAKSELKNFVGKDTL 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0104 957 CDD SF2_C_RecQ 503 639 - -
Glsi02g0104 957 MobiDBLite consensus disorder prediction 44 82 - -
Glsi02g0104 957 MobiDBLite consensus disorder prediction 25 39 - -
Glsi02g0104 957 MobiDBLite consensus disorder prediction 224 244 - -
Glsi02g0104 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 647 IPR027417 -
Glsi02g0104 957 FunFam ATP-dependent DNA helicase Q4 285 495 - -
Glsi02g0104 957 SMART helicmild6 549 630 IPR001650 -
Glsi02g0104 957 NCBIfam RecQ family ATP-dependent DNA helicase 307 655 IPR004589 GO:0004386|GO:0006310
Glsi02g0104 957 Gene3D - 503 696 IPR027417 -
Glsi02g0104 957 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 519 677 IPR001650 -
Glsi02g0104 957 MobiDBLite consensus disorder prediction 141 165 - -
Glsi02g0104 957 FunFam ATP-dependent DNA helicase Q-like 5 503 697 - -
Glsi02g0104 957 MobiDBLite consensus disorder prediction 1 82 - -
Glsi02g0104 957 MobiDBLite consensus disorder prediction 141 161 - -
Glsi02g0104 957 PANTHER DNA HELICASE RECQ FAMILY MEMBER 292 828 - -
Glsi02g0104 957 SMART ultradead3 313 499 IPR014001 -
Glsi02g0104 957 Pfam DEAD/DEAH box helicase 319 481 IPR011545 GO:0003676|GO:0005524
Glsi02g0104 957 CDD DEXHc_RecQ4-like 305 502 - -
Glsi02g0104 957 Pfam Helicase conserved C-terminal domain 535 629 IPR001650 -
Glsi02g0104 957 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 325 495 IPR014001 -
Glsi02g0104 957 MobiDBLite consensus disorder prediction 224 255 - -
Glsi02g0104 957 MobiDBLite consensus disorder prediction 1 16 - -
Glsi02g0104 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 458 IPR027417 -
Glsi02g0104 957 Gene3D - 286 494 IPR027417 -
Glsi02g0104 957 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 432 441 IPR002464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0104 Glsi-ChrGlsi02 713431 720621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0104 539 662 Eukaryotic Initiation Factors Gene Family AT3G19760 30.159 2.14e-12 68.2