Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0096 ATGATGGATGCGGCTGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTTTCTACAATGTATTGCAAAGTTTTGTCAATATTTCCATCTTTGGAAGCAGCTAGGCCTAGGAGCAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCTCTAGAGAAGGCTAAGATTGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGACTCTGTTCTTCTAAAATTTGAGAAGGCTAAACGTGCTCTTGAAGATAGTCTTAAGCAGGTGGAAGATATTGTTCCGCAATCTATTTGCTGTCAGATTCAAAAGATTGTGAATGAATTCAAGAGTATGGCATTCGCACTTGACCCATCAGAGAAACAAGTTGGTGATGATTTAATTGCATTGCTTCGGCAGGGGAGAAAATTTAACGACTCTAATGACAGTAGTGAGCTTGAATGTTTTCACCAGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAGCAGCTCTTACTGAAAGAAGAGCTCTGAAGAAGCTCATAGAAAGAGCTAGGGCTGAGGAAGACAAGCGGAAGGAATCTATTGTTGCTTATCTCTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAATTCTCGGATGATAATGATTCACAGGGTTCCTCACCTCATTCTCCTATTGTTCAGGTATCTGTCGAGGGAGGTGTTTCTGGTGTTCATTGTCAGGCCTTTGACAGACAGATTTTGAAACATAGTTCCTCTAGTTTTAAGCCATATAATTGGAAATCAGACCAAATGCCCCTGCCACCTGAGGAGTTGAGGTGTCCTATATCTTTGCAGCTTATGTATGATCCTGTCATCATTGCTTCCGGGCAAACATATGAAAGGGTTTGCATTGAGAAATGGTTCAGTGATGGGCACAACACCTGCCCCAAGACTCAACAGAAACTTTTGCATCTTTCATTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGCGAACAGAATGGAGTTCCTACTCCTGATGGCCCTCCTGAATCTCTTGACCTTAATTACTGGAGATTGGCATTATCAGAGTCTGAATCAACAAATTCAAGATCTGTAAACAGTTTCAGTTCATGCAATCCGAAGGGTGTCAAAGTGTTTCCTTTAGAAGAGAGCAATATCTCAGAGGAAGCTGGAGTAGATAAAACTGAAAGTGTATCTACGCAGGAGGAAGATACTGAGCAGTATCTCGGTTTTCTAAAAGTCTTGACAGAAGAGAACAATTGGAAGAAGAAATGTAAAATGGTAGAACAGTTAAGGATGTTACTGAGGGATGATGAGGAAGCCAGGATTTATATGGGGGCTAATGGGTTTGTTGAGGCACTTTTGCAGTTTCTGCAATCAGCTGTGTGTGAAGGGAATTTGACAGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCCGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCAGGAGTATTATCGTTGTTGGAAGAAATGATTTCTAACACAAGGTCCTGTGGTTGTGCGACTGCCCTATATCTGAATCTCTCTTGTCTCGAAGAAGCCAAGCCTATGATTGGCAGTAGTCAGGCTGTCCTGTTCCTTGCCAATCTCCTTCAAGCTAACATTGAAGTTCAATGCAAGCAAGATTCTCTACATGCACTCTATAATCTCTCTACTGTCCCTTCCAATATTCCAAACCTTCTTTCATCTGGCATCATTAGTGGCCTTCTATCCCTTCTTGCAGGCCAAGGGAATTGCATGTGGACGGAAAAATGTATAGCTGTTTTGATAAATTTGGCCGCTTCTCAATTGGGAAAGGAGGAAATGATCTCAACTCCTGGAGTCATTTGTGCATTGGCCGCAATATTGGACTCCAGTGAGCCCCTAGAGCAGGAGCAAGCTGTGTCTTGTCTTGTAGTTTTGTGTAAGGGGAATGATAAATGTAGCCACCTGGTGCTGCGAGAAGGTGTAATACCGGCGTTGGTGTCAATATCAGTTAATGGGACCTCAAGAGGAAGAGAAAAAGCTCAAAAGCTCTTGATGCTCTTTCGAGAGCAACGGCAACGAGACCATTCACCAGCTAAGACGCGTTTAGCCCCCCCTGAAACTAGTAATTTGTCTAGGCCTCCTCCAGAAACGAAACCGCTGTGTAAGTCAATGTCTAGAAGAATGATGGCGAAACCATTTAAATATTTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2298 0.4217 MMDAAEVEENLFAASDAKLHGEMCKALSTMYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKIVLQHCSECSKLYLAITGDSVLLKFEKAKRALEDSLKQVEDIVPQSICCQIQKIVNEFKSMAFALDPSEKQVGDDLIALLRQGRKFNDSNDSSELECFHQAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSSPHSPIVQVSVEGGVSGVHCQAFDRQILKHSSSSFKPYNWKSDQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQKLLHLSLTPNYCVKGLVASWCEQNGVPTPDGPPESLDLNYWRLALSESESTNSRSVNSFSSCNPKGVKVFPLEESNISEEAGVDKTESVSTQEEDTEQYLGFLKVLTEENNWKKKCKMVEQLRMLLRDDEEARIYMGANGFVEALLQFLQSAVCEGNLTAQESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISNTRSCGCATALYLNLSCLEEAKPMIGSSQAVLFLANLLQANIEVQCKQDSLHALYNLSTVPSNIPNLLSSGIISGLLSLLAGQGNCMWTEKCIAVLINLAASQLGKEEMISTPGVICALAAILDSSEPLEQEQAVSCLVVLCKGNDKCSHLVLREGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPAKTRLAPPETSNLSRPPPETKPLCKSMSRRMMAKPFKYFWKSKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0096 765 Gene3D - 417 545 IPR011989 -
Glsi02g0096 765 Coils Coil 88 108 - -
Glsi02g0096 765 MobiDBLite consensus disorder prediction 709 739 - -
Glsi02g0096 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Glsi02g0096 765 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Glsi02g0096 765 Gene3D - 546 711 IPR011989 -
Glsi02g0096 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Glsi02g0096 765 Coils Coil 176 196 - -
Glsi02g0096 765 SUPERFAMILY ARM repeat 430 702 IPR016024 -
Glsi02g0096 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Glsi02g0096 765 SMART arm_5 540 581 IPR000225 GO:0005515
Glsi02g0096 765 SMART arm_5 455 499 IPR000225 GO:0005515
Glsi02g0096 765 SMART arm_5 582 623 IPR000225 GO:0005515
Glsi02g0096 765 SMART arm_5 501 539 IPR000225 GO:0005515
Glsi02g0096 765 PANTHER U BOX DOMAIN-CONTAINING 24 709 - -
Glsi02g0096 765 CDD RING-Ubox_PUB 281 333 IPR045210 -
Glsi02g0096 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Glsi02g0096 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Glsi02g0096 765 SUPERFAMILY RING/U-box 277 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0096 Glsi-ChrGlsi02 660313 665213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0096 2 764 U-box Gene Family AT1G24330 66.710 0.0 1022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0096 02 660313 665213 Glsi02g0096 02 660313 665213 ECH