Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0088 ATGAAGCCCATGGCAGTATCGCTCCTCAACGTGTCGCTCCTACTACTGTGTCTTGGATCAGCATTCCAAACCACCGCCTCTCCAAGCTCTTGGCCTCTTACTCTCTTTCTCTTCTCATCCCTCACCCTCTTCGCTATCTCCCTAAACTATTGGCTACTTCCTGGAGGCTATGCATGGAGGAATTACCGCCATTACGATAACTCTACAAAACTATCTGGTCCCATGGGATGGCCTCTGTTGGGGACTTTGCCTCGAATGGGTTCTCTGGCTCACTGTAAACTCGCTGCCATGGCCATTTCAATGAACGCAAAAAGGCTCATGGCGTTCAGCTTAGGAGCCACGCCCGTTATTATCAGCAGCCACCCGGAGACCGCTAGGGAAATCCTGTGTGGGTCATCCTTCTCGGATCGTCCCATTAAACAATCAGCTCGCTTGCTTATGTTTGAGCGAGCCATTGGTTTCGCACCCTCCGGGACCTATTGGCGCCATCTCCGTAAGATCGCAGCCTCCCACATGTTCTCTCCGAGGAGGGTTTCCAGCCTAGAGGGACTCCGGCAACACGTGGCAGATGAAATGGTGATGAGGATGGAGAAGGAGATGGAGGAGAAAGGGGTTGTGGAAGTTAGAGGTATATTGCAAAAGGGGTCTTCGAGTAATATTTTGGAGAGTGTGTTTGGTAGTTGTTTGAGTCGTGAGAGGGAGGAGTTAGGTAATATGGTTGAGGAAGGGTACGACTTAATTAGTAAGTTTAATTGGGAAGATTTTTTCCCATTAAAATTTTTAGACTTTGGTGGAGTGAAGAGAAGGTGTCACAAATTGGCGGCTAAGGTGAATAGTGTGGTGGGTCAAATTGTGAAGAACCGAAAAGGAGCTGGGGATTTCGTTAGGCAGAATGATTTCCTTGGCGCTTTGTTATGCTTGCCTAAAGAGGAAAGGCTAAGTGATTCAGATATGGTGGCTATTTTGTGGGAAATGTTGTTTCGGGGCACAGACACAGTTGCTATCCTTCTCGAATGGATCATGGCCAGGATGGTTTTACACCAAGACATACAACAGAAAGCCCGCCAAGAGATTGACACGTGCGTCGGCATACATGGTCGCGTGCGAGACTCCGACATTCCCAACCTCCCTTACCTCCAAGCCATAGTGAAAGAAGTTCTCCGTTTGCACCCACCGGGCCCATTGCTCTCATGGGCTCGCCTCGCAGTCAATGACGTACACGTGGATAAGTTGCTGGTGCCAGCTGGCACAACAGCGATGGTTAACATGTGGGCCATTACACATGACTCATCTATTTGGGAAGAGCCATGGACCTTCATGCCTGGACGGTTCATTAGGGAAGACGTGTCCATAATGGGCTCGGACCTGAGGCTCGCACCATTCGGCGCTGGCCGCAGGGTGTGTCCAGGGAGAGCGCTAGCCTTAGCCACAGTCCATCTTTGGCTTGCAAGACTTCTCCACCAGTTCATATGGCTTCCAGCTGCACAGAGTGTGGATCTTTCAGAGTGCCTGAGGCTCTCTCTTGAAATGAAAAAACCTCTGCGATGTCAAGTGATTCGTAGAAGGAACATCTACGATGCAGGGTTTGAGAGCTCCTCGCCGTTGACTTTTGTCTCAGGATACTTGTTCAGGAACTATATTTGCTGCTTTGATTTTTCCCACAAAAGCTGA 1671 0.4967 MKPMAVSLLNVSLLLLCLGSAFQTTASPSSWPLTLFLFSSLTLFAISLNYWLLPGGYAWRNYRHYDNSTKLSGPMGWPLLGTLPRMGSLAHCKLAAMAISMNAKRLMAFSLGATPVIISSHPETAREILCGSSFSDRPIKQSARLLMFERAIGFAPSGTYWRHLRKIAASHMFSPRRVSSLEGLRQHVADEMVMRMEKEMEEKGVVEVRGILQKGSSSNILESVFGSCLSREREELGNMVEEGYDLISKFNWEDFFPLKFLDFGGVKRRCHKLAAKVNSVVGQIVKNRKGAGDFVRQNDFLGALLCLPKEERLSDSDMVAILWEMLFRGTDTVAILLEWIMARMVLHQDIQQKARQEIDTCVGIHGRVRDSDIPNLPYLQAIVKEVLRLHPPGPLLSWARLAVNDVHVDKLLVPAGTTAMVNMWAITHDSSIWEEPWTFMPGRFIREDVSIMGSDLRLAPFGAGRRVCPGRALALATVHLWLARLLHQFIWLPAAQSVDLSECLRLSLEMKKPLRCQVIRRRNIYDAGFESSSPLTFVSGYLFRNYICCFDFSHKS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0088 556 SUPERFAMILY Cytochrome P450 73 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 Gene3D Cytochrome P450 59 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 FunFam Cytochrome P450 78A5 63 521 - -
Glsi02g0088 556 Pfam Cytochrome P450 73 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Glsi02g0088 556 PANTHER CYTOCHROME P450 78A7-RELATED 22 522 - -
Glsi02g0088 556 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Glsi02g0088 556 PRINTS P450 superfamily signature 468 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0088 Glsi-ChrGlsi02 592252 601598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0088 33 522 Cytochrome P450 AT1G13710 51.992 3.24e-179 513