Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0074 ATGTATCTCCTTCTCTCTTCCGTAAAACCTTCAGTGCGTTTTGAAAGGGAGCCAAAACTTTCAAATGTACTAGAAGTATCTCAAGAAAGAGACTGGTGTAGGTTGTCGGCGTTAATTTCCAATGGAAAAATAAGTCTTAAATTGTGGTCTGTTGCTGCTGTTGCTGAAATGTTGGAAGTTATGTTCCGTCAAGATTATCATTTGTTGGATCTTCTGATGGAGTGGAATACAAAATCTCCCTCGCAGTGGGACTGGGAACACATATTCCTCTCCAATGCAAAAGCAACCGAAAATCCTAGTTTACAACCAACAGACTGGAGTGGTGAAGCAGATCGAGAAATCAATGTTGGGTTGTTCTATCCATTGGGTGTTAGGGGTTATTCTGGGTCTGAGCTAATGCATGGTTCTTTGTCAAGGAGCTCAAAAGCTGCTTCCATCAATTCCTCATCAAATGGGTATGGCAAAACATCGTTGTTCAATTTTGAAGATTCCCAAGAAGATTCTAGTGGTAAGAAAGAAATGTCAAAAGAAGAGCCAGTTGGATCATCTCCCACACTTGAGCCTTCTTCTGTCTCTGGTGAACCATTGCTTAGTCTAAAGCTTGGTAAACGGCTGTACTTTGAAGATGCTTGCCCGGGAAGTAATACCAAGAATCCATCTCTCTCTGGGATTTCCATGTCATCTGTCAGTACCCGAAAAAAATGCAAGTCCAATAATCAGAGCTCACAACTTCCACGCTGCCAGGTTGAAGGCTGTAACCTTGATCTCTCATCCGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAACGTGGTTGTAGGTGGTTTGGAATGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGCGTTTGATGATAAAAAGAGAAGTTGCCGGCGTCGTCTTTATGATCACAATGCTAGGCGTCGCAAGCCTCACCCTGAAGCCGTCCTGTTGATTACATCAACTTTGTCTTCATCACCATATGATGGCGGGCAACAGATGGTCCCATTTTCTTATTCAAGGGCTGCTACAAACTTAGCCTGGCAAGATATATACAGAAGTAAACTTCCCCAGACAAAAGAATGTCTCATGAAGGCTGCAAAAGCAGGAGGTACCAATGGGCAGGTGCATCAACCCTTAAATGAGATCCCAAGTACCTTCACTATGCTTTCTAATGATTCTAGCGGTCTTTGCACATCCAAAGGCATTGCAGCCAGGACTATCAATCCAGGCATAGAAGATTCCATTACTTTATCTGATCTGAATGCTACACAAGATTTTAACAGTGCTCTCTCTCTTCTGTCAACAAATTCTTGGGGTTCATATGAAACGAAGTCCATTTATCAAGAACACTCAAATCACATAACTCATACTGGTATGACTCAGCCTATAGCACACTCAATGACTCAGCGCTTGCCTCTTGCTTCATCAGAATATTGGCAGACTCGTCAACAACCATTAGACTCCCGAATGGGTGTCTCATGCTCAGATTGTGAGGATGACAATCATTTTCAAAACTTCCAGCTGTTTAGAGCCTCCTATGAATCTGGCTTTTCTTGCAACCAGTTGGATTAA 1605 0.4274 MYLLLSSVKPSVRFEREPKLSNVLEVSQERDWCRLSALISNGKISLKLWSVAAVAEMLEVMFRQDYHLLDLLMEWNTKSPSQWDWEHIFLSNAKATENPSLQPTDWSGEADREINVGLFYPLGVRGYSGSELMHGSLSRSSKAASINSSSNGYGKTSLFNFEDSQEDSSGKKEMSKEEPVGSSPTLEPSSVSGEPLLSLKLGKRLYFEDACPGSNTKNPSLSGISMSSVSTRKKCKSNNQSSQLPRCQVEGCNLDLSSAKDYHRKHRVCESHSKSPNVVVGGLECRFCQQCSRFHGLSAFDDKKRSCRRRLYDHNARRRKPHPEAVLLITSTLSSSPYDGGQQMVPFSYSRAATNLAWQDIYRSKLPQTKECLMKAAKAGGTNGQVHQPLNEIPSTFTMLSNDSSGLCTSKGIAARTINPGIEDSITLSDLNATQDFNSALSLLSTNSWGSYETKSIYQEHSNHITHTGMTQPIAHSMTQRLPLASSEYWQTRQQPLDSRMGVSCSDCEDDNHFQNFQLFRASYESGFSCNQLD 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0074 534 ProSiteProfiles Zinc finger SBP-type profile. 244 321 IPR004333 GO:0003677
Glsi02g0074 534 FunFam Squamosa promoter-binding-like protein 14 238 308 - -
Glsi02g0074 534 SUPERFAMILY SBT domain 245 325 IPR036893 GO:0003677|GO:0005634
Glsi02g0074 534 MobiDBLite consensus disorder prediction 157 193 - -
Glsi02g0074 534 Gene3D - 237 308 IPR036893 GO:0003677|GO:0005634
Glsi02g0074 534 Pfam SBP domain 247 320 IPR004333 GO:0003677
Glsi02g0074 534 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 137 478 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0074 Glsi-ChrGlsi02 523011 527379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0074 73 491 SBP-box Gene Family AT5G43270 40.706 3.90e-60 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi02g0074 SBP 6.4e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0074 02 523011 527379 Glsi02g0074 02 523011 527379 ECH