Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0071 ATGGTGAGCAGCTCTGCGGACCCATTTGCACAGCGTGACTTTCAAAAGGCTCTGCCGAGTGGTGAGTGGGTGAGGGTGAGGGCGATGGAGTGCTGCAAATTGCAATGCACCATGTGGTTGGAGGATTCAGAAACTTTTGCTGCAAGTGGGTTCCCTTATCCGGCCACCGGAAAAAAGAAAGAAAAAGATAATAACGCCTTGAGAGGTTACAATCATGCGTGCTTCGTCTCTTTACCTACTCTTTTGACTCTTGGTCCTCCCATGGCAATATTGAAAAAGTACGGGGTATCTAATGCCATTCGGCAGAGAAGTGGATGCTTATTCCTTGAAATTTTGCTTTCGTGCGAGGGTTCTAAGTCGGGAGATTCTGTGGATTTGACAGTGGTTCTCTCACTAGACTACCTGGAATTAGCTAGAAGTCATACCCGCTACTCCCTGGAACTGTTTCTAGTTAACTTGTTTTGGTTACTGTTGTGGATGGGTTTGCTCCTTGTAGTTGGGTTTGGTCTAAAGGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGATTGTGTCAGTCATTTACATGAACTGGTTTAGTAACAGCGCAATTATGGACACCAAGGTTGGTGTTCTCGGTGGGAAGATGTGGCTCAAATGGTGGGAGAAGATCTCGGGGAATAGTTGTAAAATCCACCAACACTACTACCAGTATATTGGATCCAAGAAGGTTAGGAGAACGCTGTGGAAAAAGCTTTTGCTGACATGGGTACTGGGTTGGACCCTAGTATCTTTGTGGATCCTCTGCTACATGACCTTACAAGCCACCGAGAAGAGGAAAGAAACTCTGGCAAGTATGTGTGATGAGAGGGCTAGGATGCTGCAAGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTGATCTCAACCTTCCACCATGCCAAGAGCCCCTCTGCCATCGATCAGACAACTTTTGCCAGTTACACGGAACGGACTGCTTTTGAGAGGCCCCTCACTAGTGGTGTTGCGTATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAGAAGCAACAAGGCTGGACCATTAAGAGGATGGATACCGTGGAGCAGAACCCGGTTCATAAGGATGACTATGCCCCAGAGGCATTGGAGCCATCCCCCGTTCAGGAAGAATATGCTCCTGTCATCTTTGCACAGGATACTATTTCACATGTGATTTCTGTTGACGTGCTTTCCGGAAAGGAGGACGGTGAAAATGTGTTGCGTGCAAGAGAATTAGGGAAAGGGGTTTTAACTGCTCCTTTCAGGCTGCTCAAAACAAATCGTCTAGGAGTTATCCTGACATTTGCTGTCTACAAGACAGATCTTCCATCCAATGCAACCCCAAATGAACGAATTCAAGCAACAGATGGGTATCTTGGTGGCGTTTTTGATATTGAGTCATTGGTGGAAAAACTACTTCAACAACTTGCTAGCAAGCAAACTGTAATTGTTAATGTGTATGATACTACTAATCATACCCACCCAATTGCCATGTATGGCTCAAATGTATCAGATGATGGGTTCCATCATGTCAGCTTTCTGAACTTTGGAGATCCTTTCAGGAAGCATGAAATGCACTGCAGGTTCAAACAGAAACCTCCGTGGCCATGGTTGGCAATAACTACTTCAATTGGCATCCTTGTTATTGCGCTCCTTGTAGGGCATATTTTCCATGCTACTGTGAACCGAATTGCTAAAGTAGAAGATGATTACCGTGAGATGATGGAGCTTAAGAAACGAGCTGAAGCAGCTGATGTCGCAAAATCCCAGTTCCTGGCTACTGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTCTAGGAATGTTGAATATGCTTATGGACACAGATCTAGATGTAACACAGCAGGAATATGTCCGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTAGAGCTTGAGGCAGTGTTGTTTGACTTACGGGCAGTTTTGGATGATGTATTATCACTGTTTTCTGAGAAATCTCAAGCAAAAGGAGTAGAGTTGGGAGTTTATATCTCAGAGCGGGTTCCTGAACTGCTAATTGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTTATGGGCAACTCAATTAAGTTTACGGAAAAAGGACACATCTATGTCACTGTCCATCTCATTGAGGAGCTTGTCGACTCAATTGAAGTTGCAACATCAAAGAATACCTTGAGTGGCTTTCCTGTTGCTGATGGGCGCCAAAGTTGGAAAAGATTCAGTACTATCAGTCAAGAGGGACTGCTTGGTTCTTTCTCATCTTCTTCCTCTGATCGCATTACTCTTATTGTATCAGTTGAGGATACAGGCGAAGGTATTCCTTTAGAAGCCCAATCCCGCATCTTCACTCCATTCATGCAGGTAGGTCCATCAATCTCCCGAAAACATGGGGGAACAGGTATTGGGCTGAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGGGAAATTGGATTTGTGAGCATACCCAAAATTGGATCTACGTTCACATTTACAGTTGTCTTCACCAACGGATGCCCCAACTCAAATGAGTGTAGAAGCCAGCAAATCAATATCCAGCCTAACCTTGCATCCGCAGAATTTCAGGGCATGACTGCACTAGTTATAGACCCTAGACCTGTTCGAGCTAACGTGTCGACATATCACATCCAACGGCTTGGCATTCATGTTGAAATGGTTTCAGATTTAAATCAAGGTTTGTCTACCATAAGTAATGGGAACATAGTTATTAATATGATCCTGGTTGAACAGGAGGTCTGGGATAGGGATCCTGGCATTTCTTCTCACTTTATCAGTAGTACAAGGAAAATTGATCGCGGGGTTCCTCCAAAGCTGTTCGTTCTTACTAATTCTAGTAGTTCTAAAACGAGTTCTGTAACATCGGGTGTTCATAATCCGACTGTCATCACGAAACCTCTGAGAGCAAGTATGCTTGCTGCGTCACTACAGCGAGCCATGGGCGTTGGGAACAAGGGGAATCCTCGGAATGGGGAGGTTCCAAGTTTATCTCTCCGCCATCTTCTGCTTGGGAGAAAAATTCTCATTGTTGATGACAATAGTGTGAATCGCACTGTAGCAGCTGGCGCTTTAAAAAAGTATGGAGCTGATGTGGTTTGTGTTAACAGTGGAAAAGATGCCATCTCTTCGCTGAAGCCACCCCATCAGTTTGATGCCTGTTTTATGGATATTCAAATGCCTGAAATGGATGGGTTTGAAGCTACTAGGAGAATTCGGGAGTTGGAATATCATGTGAACCAAGAAGTGCCTGCAGAAGAATCAGAGAATATTTCAAACTGGCATGTACCCATTTTGGCCATGACTGCGGACGTGATCCAGGCTACACACGAGGAATGCCTGAAATGTGGAATGGATGGATATGTCTCCAAACCATTTGAAGCTGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCATCTTGA 3549 0.4446 MVSSSADPFAQRDFQKALPSGEWVRVRAMECCKLQCTMWLEDSETFAASGFPYPATGKKKEKDNNALRGYNHACFVSLPTLLTLGPPMAILKKYGVSNAIRQRSGCLFLEILLSCEGSKSGDSVDLTVVLSLDYLELARSHTRYSLELFLVNLFWLLLWMGLLLVVGFGLKVGHLLLVLCCWIVSVIYMNWFSNSAIMDTKVGVLGGKMWLKWWEKISGNSCKIHQHYYQYIGSKKVRRTLWKKLLLTWVLGWTLVSLWILCYMTLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQTTFASYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTVEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTISHVISVDVLSGKEDGENVLRARELGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIAMYGSNVSDDGFHHVSFLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLNMLMDTDLDVTQQEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDLRAVLDDVLSLFSEKSQAKGVELGVYISERVPELLIGDPGRFRQIITNLMGNSIKFTEKGHIYVTVHLIEELVDSIEVATSKNTLSGFPVADGRQSWKRFSTISQEGLLGSFSSSSSDRITLIVSVEDTGEGIPLEAQSRIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTVVFTNGCPNSNECRSQQINIQPNLASAEFQGMTALVIDPRPVRANVSTYHIQRLGIHVEMVSDLNQGLSTISNGNIVINMILVEQEVWDRDPGISSHFISSTRKIDRGVPPKLFVLTNSSSSKTSSVTSGVHNPTVITKPLRASMLAASLQRAMGVGNKGNPRNGEVPSLSLRHLLLGRKILIVDDNSVNRTVAAGALKKYGADVVCVNSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATRRIRELEYHVNQEVPAEESENISNWHVPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSS 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0071 1182 PRINTS Bacterial sensor protein C-terminal signature 815 825 IPR004358 GO:0016310|GO:0016772
Glsi02g0071 1182 PRINTS Bacterial sensor protein C-terminal signature 797 811 IPR004358 GO:0016310|GO:0016772
Glsi02g0071 1182 PRINTS Bacterial sensor protein C-terminal signature 832 850 IPR004358 GO:0016310|GO:0016772
Glsi02g0071 1182 PRINTS Bacterial sensor protein C-terminal signature 856 869 IPR004358 GO:0016310|GO:0016772
Glsi02g0071 1182 SMART REC_2 1046 1175 IPR001789 GO:0000160
Glsi02g0071 1182 ProSiteProfiles CHASE domain profile. 313 539 IPR006189 -
Glsi02g0071 1182 Gene3D - 264 316 - -
Glsi02g0071 1182 Pfam Response regulator receiver domain 1048 1174 IPR001789 GO:0000160
Glsi02g0071 1182 Gene3D - 568 663 - -
Glsi02g0071 1182 Coils Coil 577 597 - -
Glsi02g0071 1182 ProSiteProfiles Response regulatory domain profile. 1047 1179 IPR001789 GO:0000160
Glsi02g0071 1182 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 654 868 IPR036890 -
Glsi02g0071 1182 Pfam CHASE domain 316 512 IPR006189 -
Glsi02g0071 1182 CDD PRTases_typeI 1000 1075 IPR000836 -
Glsi02g0071 1182 SMART HKATPase_4 712 872 IPR003594 -
Glsi02g0071 1182 SMART HisKA_10 600 665 IPR003661 GO:0000155|GO:0007165
Glsi02g0071 1182 ProSiteProfiles Histidine kinase domain profile. 607 872 IPR005467 -
Glsi02g0071 1182 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 585 666 IPR036097 GO:0000155|GO:0007165
Glsi02g0071 1182 SUPERFAMILY CheY-like 1045 1179 IPR011006 -
Glsi02g0071 1182 Gene3D - 1043 1182 - -
Glsi02g0071 1182 FunFam Histidine kinase 4 572 663 - -
Glsi02g0071 1182 Pfam His Kinase A (phospho-acceptor) domain 600 665 IPR003661 GO:0000155|GO:0007165
Glsi02g0071 1182 PANTHER TWO-COMPONENT HISTIDINE KINASE 254 1172 - -
Glsi02g0071 1182 SMART CHASE_2 313 514 IPR006189 -
Glsi02g0071 1182 Gene3D - 664 872 IPR036890 -
Glsi02g0071 1182 CDD HisKA 600 661 IPR003661 GO:0000155|GO:0007165
Glsi02g0071 1182 SUPERFAMILY CheY-like 895 1022 IPR011006 -
Glsi02g0071 1182 ProSiteProfiles Response regulatory domain profile. 900 1021 IPR001789 GO:0000160
Glsi02g0071 1182 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 712 871 IPR003594 -
Glsi02g0071 1182 CDD HATPase_EvgS-ArcB-TorS-like 717 870 - -
Glsi02g0071 1182 FunFam Histidine kinase 4 317 546 - -
Glsi02g0071 1182 Gene3D CHASE domain 317 546 IPR042240 -
Glsi02g0071 1182 CDD REC_hyHK_CKI1_RcsC-like 1048 1175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0071 Glsi-ChrGlsi02 492755 501434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0071 160 1181 Miscellaneous Gene Families AT1G27320 68.798 0.0 1417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi02g0071 CHASE 8.2e-35 CL0165