Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0068 ATGCAAACTGGTTACAATATTAATGATCTGTACCAAGAAGCTCAAACACGATGGCTGAAGCCTGCAGAAGTGCTGTACATTTTACAGAATCATGAACAATATCAGATTACCCAAGAGCCCCCTCAACAACCAACCAGTGGAAACTTGTTTCTATTTAACAAAAGAGTCCTGCGCTTTTTCCGTAGAGATGGTCATAATTGGAGGAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACATGAACGACTCAAGGTTGGAAATGTTGAAACCTTAAATTGTTACTATGCACATGGAGAGCAGAACCCCACCTTTCAGAGACGGAGCTATTGGATGTTGGATCCGGCATATGAACATATTGTCCTGGTACATTACAGAGAAACAAGAGAGGGAAAGCCCGGTTCTGGACCTGTCACACAACTGTCACCAGGACCCTCATCTACATTTAGTCAGAGCCCTACCTCATACACTACTCAGAACCTAGGGACAACATCCATATTTGGTGATTCATATGAACCAAATCAGTGTTTCTCCAGTCCTGGATCTGCAGAAGTTTCATCTGATATAGGCATAAAGAACAGTGGAATAGATCACTTGGATGGAACAGATGCAGAATCAGGAATTTCAACTGAACTTGAGGTTACACAAGCTTTGCGCCGACTGGAGGAGCAGCTGAGTTTGAATGAAGACAGTTTCAAGGACATGGCTTCTTTCTGCAGTGAGCAGGAAAATGGTCATGATTCAAACCCTCAGCAAAATAAATTGATACATAAGCAAGATTTCACTGCAGATTTCCCTGCACTGGGTGATTATAGCCAATCTTATGATGGATATAGTGGCAGACAAGGTGACAGTGGTGAATATTATCATAAAGAGCTGGACCATAATTGCCCTGATGGAAATGGAAAGGCTTTATCTTGGAAGGAGATGCTGGAAACATGTAAGCCTTCATCCATGTCCAAGTTAACAGAGCAGCATGTATACAAGCCAGCTGGAAATGAAAAGCCACTTTCATATTCAGGAAGTTTGCCAATTGCTAACCAGGAAAACAGTCACTGGCTAAACTTTGGCAGTAACAATGCTGACGACTCTGTCTTTTCACTGACTCAAGACATTCATGGTGTTGAATTTCCTCCATATTCTTCTATGGTAGAAACTCAACAAACTAATTCGGACTATTATGCAACATTGTTTGACCAAAACCAAATTGGAGCATCTCTGGATGTAAACCCAAGCTTGACTGTTGCACAAAAACAGAAATTTACAATAAGAGAAGTATCCCCAGAATGGGGTTATGCCACTGAACCCACAAAGGTCATAATTGTTGGATCCTTTCTCTGTCATCCCTCGGGCTCTGCCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCCGTTGAAATTATTCAAGATGGTGTGATCTGTTGTGAAGCTCCATCTCACCTTTCTGGGAAGGTTACTCTGTGCATTACTTCTGGTAACCGGGAGTCCTGCAGTGAAGTTCGAGAGTTTGAATACCGCAATAAGACTTGCACTCATTGCAATTCTCAAGAAAAAGAGTCCACTAGAAGTCCAGAAGAGCTATTATTACTTGTTAGATTTGTGCAGATGCTCCTTTCAGATTCTTCTGCAAAGAAAGACAACATAGAATCTGTAAATCATGAACTGAGAAAACAAAAAGACGATGATGATTTGTGGAGCCATGTTATAGAGGCTCTTCTAGTTGGTAGTGGAACTTCATCTGGTACCGTTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTTCAGTTGTGGCTTTCTTTGAGATCCCAGGAAAGAGATGAAGAGACAGGCTGTTCTTTGTCCAAGAAGGAGCAGGGCATTATACACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTTAGTTGTCGTGTAAATATAAATTTCCGTGACATCAATGGATGGACTGCCCTGCATTGGGCCGCACGTTTCGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCAACTGGTAAAACTGCAGCGTCTATTGCAGCCAACTCTGGGCATAAGGGTCTAGCAGGTTACCTTTCAGAGGTAGATCTAACAAGCCATTTGTCATCCCTCACACTGGAAGAAAGTGAGCTATCTAAAGGTTCTGCTGAGCTTGAAGCGGAGTTAACTTTGAGTAGTGTCTCCAAGGAAAATCTTACAGACAGTGAAGATCAGATTTCACTCAAAGATACCTTGGCTGCTGTGAGAAATGCAGCTCAGGCAGCTGCACGTATACAGTCTGCTTTTCGTGCACATTCCTTTAGGAAACGGAGAGAGAGAGAAGTTGCCGCTACTGCTGCTGCTGCTGCTGGTATAGATGGATATGGCATCAGTGATAACATTCCAGAGCTTTCTGCCATGTCAAAACTCACCTTCCGCAACTCACGTGATTTCAATTCAGCTGCCTTATCAATTCAGAAGAAGTATCGAGGTTGGAAAGGCCGCAAAGATTTCTTAGCATTGCGCCAGAAAGTAGTCAAGATACAGGCTCATGTGAGGGGTTACCAGGTAAGAAAGCATTACAAGATAATATGTTGGGCAGTTGGATTCTTTGACAAGGCTGTGCTACGATGGAGGAGGAAAGGAGCTGGTTTACGAGGTTTTCGACATGAGATGGAGTCAGTTGATGACAGTGAAGATGAAGACATTCTCAAGGTGTTCCGAAAACAAAAAGTAGATGTAGCACTTGAAGAGGCTGTTTCACGGGTGCTGTCAATGGTTGATTCTCCTGATGCTCGTCAACAATATCATCGCATGCTTGAGAAGTATCGTCAAGCTAAGGCTGAACTTGGCAGCACAAGTCAAGAAGTATCATTATCAACTTTCCTAGGGGATGCTTCTGATATGGAAGATGACGATTTGTTTCAATTTCCCTAG 2964 0.4305 MQTGYNINDLYQEAQTRWLKPAEVLYILQNHEQYQITQEPPQQPTSGNLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNVETLNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRETREGKPGSGPVTQLSPGPSSTFSQSPTSYTTQNLGTTSIFGDSYEPNQCFSSPGSAEVSSDIGIKNSGIDHLDGTDAESGISTELEVTQALRRLEEQLSLNEDSFKDMASFCSEQENGHDSNPQQNKLIHKQDFTADFPALGDYSQSYDGYSGRQGDSGEYYHKELDHNCPDGNGKALSWKEMLETCKPSSMSKLTEQHVYKPAGNEKPLSYSGSLPIANQENSHWLNFGSNNADDSVFSLTQDIHGVEFPPYSSMVETQQTNSDYYATLFDQNQIGASLDVNPSLTVAQKQKFTIREVSPEWGYATEPTKVIIVGSFLCHPSGSAWACMFGDVEVPVEIIQDGVICCEAPSHLSGKVTLCITSGNRESCSEVREFEYRNKTCTHCNSQEKESTRSPEELLLLVRFVQMLLSDSSAKKDNIESVNHELRKQKDDDDLWSHVIEALLVGSGTSSGTVDWLLEELLKDKLQLWLSLRSQERDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCRVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPTGKTAASIAANSGHKGLAGYLSEVDLTSHLSSLTLEESELSKGSAELEAELTLSSVSKENLTDSEDQISLKDTLAAVRNAAQAAARIQSAFRAHSFRKRREREVAATAAAAAGIDGYGISDNIPELSAMSKLTFRNSRDFNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKIICWAVGFFDKAVLRWRRKGAGLRGFRHEMESVDDSEDEDILKVFRKQKVDVALEEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELGSTSQEVSLSTFLGDASDMEDDDLFQFP 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0068 987 MobiDBLite consensus disorder prediction 128 163 - -
Glsi02g0068 987 FunFam Calmodulin-binding transcription activator 2 826 874 - -
Glsi02g0068 987 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677
Glsi02g0068 987 Pfam Ankyrin repeats (3 copies) 632 709 IPR002110 GO:0005515
Glsi02g0068 987 FunFam Calmodulin-binding transcription activator 2 415 508 - -
Glsi02g0068 987 MobiDBLite consensus disorder prediction 138 163 - -
Glsi02g0068 987 SUPERFAMILY Ankyrin repeat 618 710 IPR036770 -
Glsi02g0068 987 ProSiteProfiles Ankyrin repeat region circular profile. 649 675 - -
Glsi02g0068 987 Gene3D Immunoglobulins 415 506 IPR013783 -
Glsi02g0068 987 ProSiteProfiles Ankyrin repeat profile. 649 681 IPR002110 GO:0005515
Glsi02g0068 987 SMART ANK_2a 688 717 IPR002110 GO:0005515
Glsi02g0068 987 SMART ANK_2a 649 678 IPR002110 GO:0005515
Glsi02g0068 987 ProSiteProfiles IQ motif profile. 828 856 IPR000048 GO:0005515
Glsi02g0068 987 SUPERFAMILY E set domains 421 505 IPR014756 -
Glsi02g0068 987 SMART CG_1_2 10 128 IPR005559 GO:0003677
Glsi02g0068 987 SMART iq_5 849 871 IPR000048 GO:0005515
Glsi02g0068 987 SMART iq_5 766 788 IPR000048 GO:0005515
Glsi02g0068 987 SMART iq_5 826 848 IPR000048 GO:0005515
Glsi02g0068 987 Pfam IPT/TIG domain 421 504 IPR002909 -
Glsi02g0068 987 Pfam CG-1 domain 13 126 IPR005559 GO:0003677
Glsi02g0068 987 FunFam Calmodulin-binding transcription activator 4 isoform A 530 714 - -
Glsi02g0068 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 877 IPR027417 -
Glsi02g0068 987 ProSiteProfiles IQ motif profile. 850 874 IPR000048 GO:0005515
Glsi02g0068 987 Gene3D - 507 714 IPR036770 -
Glsi02g0068 987 Pfam IQ calmodulin-binding motif 852 871 IPR000048 GO:0005515
Glsi02g0068 987 Pfam IQ calmodulin-binding motif 829 847 IPR000048 GO:0005515
Glsi02g0068 987 ProSiteProfiles IQ motif profile. 767 796 IPR000048 GO:0005515
Glsi02g0068 987 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 958 - -
Glsi02g0068 987 Gene3D - 826 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0068 Glsi-ChrGlsi02 476570 484640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0068 5 987 CAMTA Transcription Factor Family AT1G67310 54.308 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Glsi02g0068 CG-1 6.6e-49 No_clan