Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0046 ATGGGCTGTTTTTCGTGTTTCGATTCGAAGGAGGATGAGAAGCTCAATCCTCAGCAAGAAACCGATGATCGTAAGCAAGGCCATCCAGCCGTCCCCTCTCACATTTCCAGATTGCCCTCTGGAGCTGACAAGCTTCGCTCAAGAAGTAATGGAGGATCCAAAAGAGAACTGCCTGCTCCTAAGGATGGGCCTGGTGTCCAAATTGCTGCTCAAACTTTTACTTTCCGTGAACTTGCAGCTGCAACTAAGAACTTTAGGCCAGAGTCCTTTATAGGGGAAGGTGGGTTTGGAAGGGTGTATAAAGGGCGTCTGGAGAGCACGGGACAGGTTGTGGCTGTTAAACAGCTAGATAGAAATGGTCTTCAGGGTAATAGGGAATTCCTGGTGGAGGTTCTCATGCTTAGTCTTCTACATCACCCTAACCTGGTGAATCTCATTGGTTACTGTGCCGATGGGGATCAACGCCTCCTTGTTTATGAATTTATGCCATTGGGGTCATTGGAAGACCACCTTCATGATCTTCCTCCTGATAAGGAACCACTAGATTGGAACACTAGGATGAAAATAGCTGCTGGTGCAGCAAAGGGATTGGAATACTTGCATGACAAGGCAAATCCTCCGGTCATTTATAGGGACTTCAAGTCATCTAATATATTACTAGATGAAGGATATCATCCAAAGCTCTCTGACTTTGGTCTTGCAAAGCTTGGTCCGGTTGGTGATAAGTCACACGTTTCCACCAGAGTGATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCCATGACTGGACAACTGACTGTGAAGTCTGACGTCTATAGTTTTGGGGTAGTTTTCTTGGAGCTGATTACTGGCCGTAAAGCCATTGACAGCACCCGGCCCCATGGAGAACAGAACCTTGTTACATGGGCACGTCCACTGTTCAATGATCGCAGGAAGTTTTCAAAGTTGGCAGATCCACGGCTGCAGGGGCGGTATCCCATGCGGGGTCTTTACCAGGCTTTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCCGCCACGCGTCCTCTGATTGGGGATGTGGTGACAGCTCTTTCTTATTTGGCCAACCAGGCATATGACCCTAACGCAGCTGGGCATGGTTATAGGGGTTCTGGTGATGATAAAAGGAGCAGAGACGAGAGAGGTGGAAGGATATCAAAAAATGAGGAAGGTGGAGGATCTGGACGCAGATGGGACTTGGAAGGGTCTGAGAAAGATGAGTCCCCACGAGAAACTGCAAGGATGTTAAACAGGGATCTAGATAGAGAACGTGCAGTGGCAGAAGCCAAGATGTGGGGAGAGAACTGGAGAGAAAAAAGACGACAAAGTGTGCAGGGCAGTTTTGATGGTACTAACGCCTAG 1386 0.482 MGCFSCFDSKEDEKLNPQQETDDRKQGHPAVPSHISRLPSGADKLRSRSNGGSKRELPAPKDGPGVQIAAQTFTFRELAAATKNFRPESFIGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFSKLADPRLQGRYPMRGLYQALAVASMCIQEQAATRPLIGDVVTALSYLANQAYDPNAAGHGYRGSGDDKRSRDERGGRISKNEEGGGSGRRWDLEGSEKDESPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSVQGSFDGTNA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0046 461 MobiDBLite consensus disorder prediction 370 461 - -
Glsi02g0046 461 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0046 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Glsi02g0046 461 Gene3D Phosphorylase Kinase; domain 1 69 161 - -
Glsi02g0046 461 Gene3D Transferase(Phosphotransferase) domain 1 162 373 - -
Glsi02g0046 461 PANTHER OS07G0668900 PROTEIN 3 370 - -
Glsi02g0046 461 FunFam Serine/threonine-protein kinase PBS1 59 161 - -
Glsi02g0046 461 MobiDBLite consensus disorder prediction 7 30 - -
Glsi02g0046 461 FunFam Serine/threonine-protein kinase PBS1 162 376 - -
Glsi02g0046 461 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Glsi02g0046 461 CDD STKc_IRAK 91 359 - -
Glsi02g0046 461 SUPERFAMILY Protein kinase-like (PK-like) 69 357 IPR011009 -
Glsi02g0046 461 Pfam Protein kinase domain 88 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g0046 461 MobiDBLite consensus disorder prediction 1 65 - -
Glsi02g0046 461 MobiDBLite consensus disorder prediction 377 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0046 Glsi-ChrGlsi02 360324 364686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0046 1 449 Glycoside Hydrolase AT3G07070 56.427 3.54e-173 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi02g0046 Pkinase 2.5e-45 CL0016