Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0038 ATGGTTAGCCCCAAATCGCAGAGGGCTGAGAGCGTTCCGTGCGACTTCTGCACCCAACAGACAGCCGTTTTATATTGCAGAGCTGACTCCGCCAAGCTCTGCTTGTTCTGCGATCAACACGTTCACTCCGCTAACTTGCTCTCTCGCAAACACTTCCGCTCTCAGATCTGCGATAATTGTACCTCCGAGCCTGTCTCCATGCGCTGCAACACCGATAACCTTGTTCTATGCCAAGACTGCGATTGGGACGCTCACGCCGCCTCTTCTGTCGCCGTCTCTCACCATCGCATCCCTGTTGAAGGCTTCACTGGATGCCCCTCCGCATCTGAGCTCGCTTCCCTCTGGGGTTTCCATTTTGATACCAAGAAATCAGATCAGTCTTCTTCATTGATTCAAAACTGGGATGATTATCGGGATTTGCTTATGCCCCTCGATTCCTGCTTGTTTAAAACCGATGGCGCCTTTCTTCAGGTTCAAGACCTGATGGTTCCCAGAGAAAATACCATGATTTACCAATCCCGGGATTTCCCAACAATCTATGACGCGCCCAAGAAACAAACTCCGTGCTGTGGGAAGCAGAAGCAGGCTATACAGAAGCAGCTAGTGGAATTGCTCAAAAGGGATTTGATGGTTGCTGATGATGGTGGCGCTGACGTTGACGGAGACGGTGGTGGCAATGCCGCTCTAGTAACTGCTGCTAATGAGGGAGAGAACTTGGTTCCTGAAACGCCGAATGAGAGGAGGGGCTTGAGGCAAGGGGATGGGCCAGCACTCGTTTTGGGAAATGGGGTCGATGGATTTCTAGTGACTGATGCTGTTGCCCAGCAACCATTGCAGCAACAAGCACCGGTTACTCCTTTGCTTATGATGCCTTCGCAGCTGGATCAGAAAGAAGGCGATATGTTGTGGCACAGTAATCCCAACGGGCCTGGTGTTCAGATATGGGATTTTCATTCTGGACGACTTAGGGTTCATGAAGAATCAAGTGCACTAGAAGCTGTATATCCAGCAAGCGATGGAGGATTTATAACTAAAAATTTTGGTGAACTTATCAGAGAATCATCCCTGACAGTGACAGATACAAAAATGTTGGGAGATATATACAAGATGAATATTGCTTATGATGATGATAAGGCGTCATATAATAATATTTCAAATAACCCAACAGCAAGTCGGGGGCCTGCAACATCCGAGAGCAATAACCTACCAATAAGAAAGCAATCGGCTGGTTCAGCTCTTGGAAAGCACGAGGGTTCCTGTAGTGCCAAAGATACGCAGTTCAGGGAACATCCTTTGCTTCTTACAGGTGACAATATGACAAAAGCAGGGAGAACCAAGGCTGACATTGACCTACTGGCCCAAAACAGGGGCAATGCCATGCTCCGTTACAAGGAGAAAAAGAAAAGTCGAAGGTACGAGAAGCACATACGATACGAATCGAGGAAGGTGAGAGCTGATACACGGAAACGTGTGAAAGGTCGATTTGTGAAGACCAGTGACTCCCCTGAAAGAGGAGGAGAAGAAGAAGAAGGGAAGAAAATAGAGTTGGCTTTTTGGTTTGTTAATAATGGTAAGAATGAAAAGGAGATAACATGGGATGATGAGTCCAAAATCTTGGATAATTGGCTTGATCGCATTGAAGAAAGGGGAAAGTTTCAGGCTGTCATGGAGAAGTGGACACTTTTCCAGGTCGTAGCAATGTTGCTTCTGCTGTCAGAGCCCTTTGCTCCCGCAAAAGGGAATTTGGAAGGGGATGCTCTGTATGCGTTCAGAAGAGCTGTGGAGGACCCAAATAATGTGCTAGAGAGTTGGGATCCCACTTTGGTGGATCCCTGCACTTGGTTTCATGTTACCTGTGATGATGATAAGCGAGTTACCCGACTAGACCTCGGACATGCAAAACTGTCTGGCCATTTGGTTGCAGAGCTGGGGAAGTTAGAGCATCTGCGGTTTCTAGAATTGTACATGAATAACTTAGTGGGTCCCATACCAAAGGAATTTGGAGAGCTAAAGAACCTCGTTAGCTTGGATCTTTACCACAATAACCTCACCGGGTGCATCCCTCCCACCCTCTCCAAACTCTCCAATCTTAAATTCCTGCGACTAAACAGCAACAAGCTGACTGGAAGAATACCAAGGGAGCTCACAAAACTAGGGAACCTTAAGATTCTAGACGTATCAAACAATGATTTGTGTGGTACCTTCCCAACATCTGGTTCCTTTTCCAAGTTCTCGGAAGAAAATTTCAAGAACAATCCCAGACTGGAAGGACCGGAATTGATGGGATTTGTCAGATATGACAATGGATTTGGAGGAACCTGCAAATAA 2328 0.4691 MVSPKSQRAESVPCDFCTQQTAVLYCRADSAKLCLFCDQHVHSANLLSRKHFRSQICDNCTSEPVSMRCNTDNLVLCQDCDWDAHAASSVAVSHHRIPVEGFTGCPSASELASLWGFHFDTKKSDQSSSLIQNWDDYRDLLMPLDSCLFKTDGAFLQVQDLMVPRENTMIYQSRDFPTIYDAPKKQTPCCGKQKQAIQKQLVELLKRDLMVADDGGADVDGDGGGNAALVTAANEGENLVPETPNERRGLRQGDGPALVLGNGVDGFLVTDAVAQQPLQQQAPVTPLLMMPSQLDQKEGDMLWHSNPNGPGVQIWDFHSGRLRVHEESSALEAVYPASDGGFITKNFGELIRESSLTVTDTKMLGDIYKMNIAYDDDKASYNNISNNPTASRGPATSESNNLPIRKQSAGSALGKHEGSCSAKDTQFREHPLLLTGDNMTKAGRTKADIDLLAQNRGNAMLRYKEKKKSRRYEKHIRYESRKVRADTRKRVKGRFVKTSDSPERGGEEEEGKKIELAFWFVNNGKNEKEITWDDESKILDNWLDRIEERGKFQAVMEKWTLFQVVAMLLLLSEPFAPAKGNLEGDALYAFRRAVEDPNNVLESWDPTLVDPCTWFHVTCDDDKRVTRLDLGHAKLSGHLVAELGKLEHLRFLELYMNNLVGPIPKEFGELKNLVSLDLYHNNLTGCIPPTLSKLSNLKFLRLNSNKLTGRIPRELTKLGNLKILDVSNNDLCGTFPTSGSFSKFSEENFKNNPRLEGPELMGFVRYDNGFGGTCK 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0038 775 Pfam CCT motif 456 498 IPR010402 GO:0005515
Glsi02g0038 775 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Glsi02g0038 775 Pfam Leucine rich repeat N-terminal domain 583 620 IPR013210 -
Glsi02g0038 775 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Glsi02g0038 775 Pfam B-box zinc finger 55 98 IPR000315 GO:0008270
Glsi02g0038 775 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 499 - -
Glsi02g0038 775 SUPERFAMILY L domain-like 584 752 - -
Glsi02g0038 775 Gene3D Ribonuclease Inhibitor 580 762 IPR032675 -
Glsi02g0038 775 ProSiteProfiles CCT domain profile. 456 498 IPR010402 GO:0005515
Glsi02g0038 775 CDD Bbox1_BBX-like 13 56 - -
Glsi02g0038 775 SMART bboxneu5 57 99 IPR000315 GO:0008270
Glsi02g0038 775 SMART bboxneu5 9 56 IPR000315 GO:0008270
Glsi02g0038 775 FunFam Somatic embryogenesis receptor kinase 1 579 765 - -
Glsi02g0038 775 Pfam Leucine rich repeat 672 731 IPR001611 GO:0005515
Glsi02g0038 775 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0038 Glsi-ChrGlsi02 313989 320994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0038 12 500 C2C2-CO-like Transcription Factor Family AT2G33500 40.162 9.45e-90 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi02g0038 LRR_8 6.4e-07 CL0022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0038 02 313989 320994 Glsi02g0038 02 313989 320994 ECH