Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi02g0009 | ATGGCAGGGGAAGCAGCAACACCTGGGGATCCGTTATCAACGCCGGAATCACCGACCTCTCCTTCTGTTGGCTTCAACACAGATCAGATTCCTCACACCAGCCGTGCATCCGAGGATGACGTTGAGGCTTCCGTTGATCCTGACATCATAAGGGATGAACCCGAAGAAACCAATGAAGAGGAGGAAGGGGAGGATCTTTACAATGACAATTTTTTGGATGACTATCGGGGGATGGAGGAGCACGACCAGTACGAATCAATTGGACTAGATGACTCCTTGGAGGATGAGAGGGATTTGGATCAAATCATGGATGACCGAAGGGCTGCTGAGATGGAGCTCGATGCCCGTGAGGGTCACATCTCCATTCGCACCAAGCTTCCTCAGCTTCTTCACGACCAGGATACTGATGATGACAGCTACAGGCCGTCGAAAAGGGCTAGGGCTGATTTCAGGCCTCCCCGAAGTGACGATGATATTGATGGGATGCAAAGTTCACCTGCAAGGTCACAACGTGGGCACTCAAGAGAGGATTTTCCAATGACTGATCAAACAGAGGATGAGCAATACGAAGATGAATATGATTATGGCAGTGAATACGAGATGTATCGTGTCCAAGGAACTCTTAGGGAGTGGGTTACAAGAGATGAAGTTCGCCGCTTTATAGCCAAAAAATTTAAGGATTTCTTACTGACATATGTTAATCCAAAGAATGAACATGGTGACTTTGAATATGTGCGGCTAATAAATGAGATGGTGTCAGCTAATAAGTGCAGCTTGGAGATTGATTACAAACAATTTATCTATGTCCATCCCAACATTGCCATCTGGCTGGCTGATGCACCTCAATCTGTTTTAGAAGTTATGGAAGACGTTGCCAAAAATGTTGTCTTTCATTTGCATGCCAACTACAGAAATATACATCAGAAGATTTATGTCCGCATAACCAACCTACCAGTTTATGATCAAATTCGCAATATAAGGCAGATCCACTTGAACACCATGATCCGAATTGGGGGAGTTGTAACTAGGCGCTCAGGAGTCTTCCCTCAATTGCAACAGGTAAAGTATGACTGTAACAAATGCGGAACAATTTTGGGACCATTTTTTCAGAATTCTTATTCAGAAGTGAAGGTCGGATCTTGCCCTGAGTGTCAATCAAAAGGACCATTCACTGTCAATATCGAGCAGACAATTTATAGGAATTATCAAAAGCTTACTCTCCAAGAAAGTCCTGGAACAGTTCCTGCAGGTCGACTTCCAAGATATAAAGAAGTGATACTATTGAATGATCTGATTGACTGTGCTCGTCCTGGCGAAGAGATTGAGGTCACAGGGATATATACTAACAACTTTGACTTGTCTCTAAACACAAAGAATGGGTTTCCAGTGTTTGCCACTGTGGTTGAGGCAAATTATGTTACAAAGAAGCAAGACCTCTTCTCTTCCTACAAACTTACCCAGGAAGACAAAGAAGAAATTGAAAAGTTGGCCAAAGACCCCAGAGTAGGAGAAAGGATTGTCAAGTCTATTGCCCCATCTATTTATGGTCACGAGGACATAAAAATTGCAATAGCTTTAGCTATGTTTGGAGGTCTGGAGAAAAATGTTGAAGGAAAACATCGGCTGCGAGGGGACATAAATGTTCTTCTTCTTGGTGATCCAGGAACAGCAAAGTCACAATTTCTGAAGTATGTTGAAAAGACTGGGCAGAGAGCTGTTTACACTACTGGGAAAGGGGCTTCTGCTGTGGGGCTCACTGCTGCAGTTCACAAGGATCCAGTCACAAGGGAGTGGACACTTGAAGGGGGAGCCCTTGTTCTAGCTGATAAAGGAATTTGTCTTATTGACGAGTTTGACAAGATGAACGATCAGGATAGGGTAAGTATTCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAGGCAGGAATTGTCACATCTCTTCAGGCGCGCTGCTCTGTCATTGCTGCTGCCAATCCTATAGGAGGAAGATATGACTCCTCAAAAACATTTTCTCAAAATGTTGAATTGACAGATCCCATCATTTCTCGTTTTGACATCCTCTGCGTTGTGAAGGATGTTGTTGATCCTGTCACCGATGAAATGCTTGCGAAGTTTGTAGTTGAGAGTCACTTCAAGTCACAGCCTAAGGGTGCAAACATAGATGAAAAGTCTCAAAGTGAATCCCAAGATGTTTATGCAGCTGCCATGCCAGCTGATCCTGATATACTTACTCAAGATCTGCTGAAGAAGTACATTACATATGCCAAGTTGAACGTGTTTCCAAGGTTACATGATGCTGATATGGATAAACTAACACATGTTTATGCTGAGCTGCGGAAGGAATCTTCACATGGACAAGGAGTCCCCATTGCTGTGAGGCACATAGAATCAATGATAAGGATGTCTGAAGCTCATGCAAGAATGCATCTCAGACAGCATGTCACACAAGAAGATGTGGACATGGCCATTCGTGTTCTACTTGATTCATTCATTTCGACCCAAAAATTTGGGGTGCAGAAAGCTTTGCAAAAGAGCTTTAGGAAGTATATGACTTTCAAAAAGGACTACAATGAATTGCTCCTCTACCTTCTTCGTGAGCTTGTAAAGAATGCATTGCGTTTTGAAGAAATTGTTACTGGATCCGCTTCAGGACTAACACATATTAATGTCAAAGTAGATGATCTCTACAACAAGGCTCAAGAGCATGAAATTTATGATCTTAAACCCTTCTTTAATAGCACTCACTTTACAAGAGCAAACTTTGTGTTGGATGAAGAGAAAGGAGTGATCAGGCATCGCCTTGCAAAAGATTAA | 2820 | 0.4294 | MAGEAATPGDPLSTPESPTSPSVGFNTDQIPHTSRASEDDVEASVDPDIIRDEPEETNEEEEGEDLYNDNFLDDYRGMEEHDQYESIGLDDSLEDERDLDQIMDDRRAAEMELDAREGHISIRTKLPQLLHDQDTDDDSYRPSKRARADFRPPRSDDDIDGMQSSPARSQRGHSREDFPMTDQTEDEQYEDEYDYGSEYEMYRVQGTLREWVTRDEVRRFIAKKFKDFLLTYVNPKNEHGDFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKNVVFHLHANYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNYQKLTLQESPGTVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSSYKLTQEDKEEIEKLAKDPRVGERIVKSIAPSIYGHEDIKIAIALAMFGGLEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVESHFKSQPKGANIDEKSQSESQDVYAAAMPADPDILTQDLLKKYITYAKLNVFPRLHDADMDKLTHVYAELRKESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALRFEEIVTGSASGLTHINVKVDDLYNKAQEHEIYDLKPFFNSTHFTRANFVLDEEKGVIRHRLAKD | 939 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi02g0009 | 939 | MobiDBLite | consensus disorder prediction | 69 | 90 | - | - | |
| Glsi02g0009 | 939 | Gene3D | - | 215 | 319 | - | - | |
| Glsi02g0009 | 939 | SMART | mcm | 319 | 833 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 390 | 404 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 466 | 477 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 451 | 462 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 355 | 367 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 332 | 349 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Glsi02g0009 | 939 | MobiDBLite | consensus disorder prediction | 33 | 51 | - | - | |
| Glsi02g0009 | 939 | MobiDBLite | consensus disorder prediction | 1 | 98 | - | - | |
| Glsi02g0009 | 939 | CDD | MCM2 | 505 | 831 | - | - | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 603 | 617 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 682 | 690 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 543 | 558 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 655 | 667 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi02g0009 | 939 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 631 | 644 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi02g0009 | 939 | MobiDBLite | consensus disorder prediction | 114 | 190 | - | - | |
| Glsi02g0009 | 939 | Gene3D | - | 350 | 400 | - | - | |
| Glsi02g0009 | 939 | Gene3D | - | 482 | 855 | IPR027417 | - | |
| Glsi02g0009 | 939 | Pfam | MCM P-loop domain | 490 | 712 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi02g0009 | 939 | MobiDBLite | consensus disorder prediction | 52 | 68 | - | - | |
| Glsi02g0009 | 939 | Gene3D | - | 323 | 448 | IPR012340 | - | |
| Glsi02g0009 | 939 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 208 | 878 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi02g0009 | 939 | Pfam | MCM N-terminal domain | 223 | 316 | IPR027925 | - | |
| Glsi02g0009 | 939 | FunFam | DNA helicase | 482 | 855 | - | - | |
| Glsi02g0009 | 939 | Pfam | MCM AAA-lid domain | 748 | 832 | IPR041562 | - | |
| Glsi02g0009 | 939 | MobiDBLite | consensus disorder prediction | 12 | 32 | - | - | |
| Glsi02g0009 | 939 | FunFam | DNA helicase | 350 | 400 | - | - | |
| Glsi02g0009 | 939 | Pfam | Mini-chromosome maintenance protein 2 | 40 | 194 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Glsi02g0009 | 939 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 512 | 835 | IPR027417 | - | |
| Glsi02g0009 | 939 | Pfam | MCM OB domain | 322 | 449 | IPR033762 | - | |
| Glsi02g0009 | 939 | SUPERFAMILY | Nucleic acid-binding proteins | 224 | 471 | IPR012340 | - | |
| Glsi02g0009 | 939 | ProSitePatterns | MCM family signature. | 611 | 619 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Glsi02g0009 | 939 | FunFam | DNA helicase | 215 | 319 | - | - | |
| Glsi02g0009 | 939 | MobiDBLite | consensus disorder prediction | 129 | 158 | - | - | |
| Glsi02g0009 | 939 | ProSiteProfiles | MCM family domain profile. | 502 | 708 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi02g0009 | Glsi-ChrGlsi02 | 132147 | 137699 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi02g0009 | 24 | 933 | Core DNA Replication Machinery Family | AT1G44900 | 76.688 | 0.0 | 1379 |