Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2372 ATGGTTGTCTCCAGGGTCCCGGGAAAAACAAAAGAGGCAAAGCTTGGTGGAATACAGTGCAAAGAAGTGTTACTGGCGGACATAGATATATCTAAAGCATTAATTGAAAGTGTTTCCACTTATTCAATTGAGCTTCTGATTCTTGGGCCGCCAAGGAGTGGCCTTGTCAGTTCACAGGAGGTGGTAGATCAATTTACAAACCGTATGATTTATCATTCGTCAGCAGTGGAAGGCCAAGCACTTATCGTATGTTTCCTTCGATGTATGACGTCGATCTGGAAACTGGAATGCCCCCCTCGCCTTTCAAGCGGTTCAGATTTCGATGGCAGAAGCTTTGGCTCATCTTTCTCAGGAACAAAATCAATTGATAACGCCTCTTCTCTGGGTGATTTGTCATTCAGCTCCCAACAAAAGTGGGATGTCATCTTCAAGGCTGTCCGTCAACATGACGCACGAATAGCTGAAGAAGCAGCATTTTTACTTGCAGAGACGGGGAAAGCAAAGTGTAGAGCTGCCGTGGAGGCAGCAGAAGCATCCAAAAAAATTGTAGAATTTGCCAGGTACAAAAAGTATGCTATAGAGGAAATTGAAGATGCAACACAACGCTTTGCGGACTCTCTCAAGATCGGTGAAGGCGGTTATGGGCCAGAATACAGATGTGAATTAGATCACACACCGGTTGCAATAAAAGTTTTAAAGCCAAATGCGGCTCAAGGACGGTCACAGTTTCAGGAGGAGCTAAGATTTAGAATTGTTGCGGAGATCGCGGCAGGACTACTTTTTCTTCATCAAACAAAGCCTAAACCGATTGTTCACCGTGATTTAAAACCTGGCAACATATTGCTTGACCGTAACTTTGTCAGCAAGATTAGTGATGTGGGATTGGCCAGGCTTGTCCAAGCCATAATGGGTTTGACTCATGTTAAACGAGCTATTGAAATGGGGACTTTTGTTGAGATGCTTGACCCAGCTGTCGAGGACTGGCCAGTCGAGGAGGCCTTACATTTTGCCAAGCTTGCTCTGCAATGTGCAGAAATGAGAAGGAAAGATAGGCCTGATCTTTGGAGCTCAATAAACTCACAGCATTTGCTGAAGATAGCCGAGTTCTGTGCAGTTTTCAAATACAGATGCATTGCTCTTCATCATGTGCCGCTCGAACTGAACACAGAAAGCATGATTGTGTAG 1185 0.4473 MVVSRVPGKTKEAKLGGIQCKEVLLADIDISKALIESVSTYSIELLILGPPRSGLVSSQEVVDQFTNRMIYHSSAVEGQALIVCFLRCMTSIWKLECPPRLSSGSDFDGRSFGSSFSGTKSIDNASSLGDLSFSSQQKWDVIFKAVRQHDARIAEEAAFLLAETGKAKCRAAVEAAEASKKIVEFARYKKYAIEEIEDATQRFADSLKIGEGGYGPEYRCELDHTPVAIKVLKPNAAQGRSQFQEELRFRIVAEIAAGLLFLHQTKPKPIVHRDLKPGNILLDRNFVSKISDVGLARLVQAIMGLTHVKRAIEMGTFVEMLDPAVEDWPVEEALHFAKLALQCAEMRRKDRPDLWSSINSQHLLKIAEFCAVFKYRCIALHHVPLELNTESMIV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2372 394 Gene3D Transferase(Phosphotransferase) domain 1 246 365 - -
Glsi01g2372 394 Gene3D Transferase(Phosphotransferase) domain 1 187 245 - -
Glsi01g2372 394 PANTHER OS02G0152300 PROTEIN 303 358 - -
Glsi01g2372 394 SUPERFAMILY Protein kinase-like (PK-like) 185 317 IPR011009 -
Glsi01g2372 394 ProSiteProfiles Protein kinase domain profile. 101 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2372 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Glsi01g2372 394 SMART serkin_6 203 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2372 394 Pfam Protein kinase domain 240 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2372 Glsi-ChrGlsi01 86407527 86416826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2372 185 358 Receptor kinase-like Gene Family AT1G78940 46.570 3.74e-69 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi01g2372 Pkinase 7.5e-12 CL0016