Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2368 ATGGGAGTTCAAAGGAAAACGCCTTCTCAGCTTCAGGCCCTTGATACTTTCTATACAGAGGAGAAGTATCCAACACAGAGAGAAATAGAAGACTATGCTGCTGCTTTGGGATTGACAGACAAGCAAGTTCGAGATTGGTTTATTGAGAAAAGGAGGAGGGAGAAGAGAGAAAATGGTGTGTTAGTACCAAAATGTTATTCTCCGGGTAAGAAACTCCCTACTCATAATGGAAAAGATATCTTGGGAGTTGCTGGTTCTAGAAAGATACAAAAAAGAGATCTGTCAAATCAGAAGGCCAACGCTCCTTCATCAAGATCCAATATGGCTCTGACCAGGAATGCGAGGAAAAAGAAAAAGCATAAATGTCTTCAGGAGTTGTTTACAGCAGACTACATTCTAAAGAAGGTGTTCCGGAAGGACGGTCCTCCTCTGGGTGAGGAATTTGATTTTCTTCCTTCAGGAGCACTCCATCACAGTGGTCCCAAAAATTCCACTGCTAATCAAGATGATCAAGGATCAACCAAAAGGAGGAAGGTTTCCAAGAGTGCAATTAGATGTCCTCCTGATTCTAATAAGAAAGCACCAGTTAAAAAACACGGTATTGGCAAAGGTTTGATGACCGTGTGGAGGGCAACAAATCCTGGTGCCGGAGACATTCCAAGTGGCTTTGGCTTTGGTGACAGTGAAGTTTCTCTAATCTCAAAATCTATTCAGCAGAAACCAGTCCGTGAGAAGAATCCACGGAAAACACTAATCATGACTAGAAGGCCAAAAAATAAATTAGAGAATCAAGGAAATAAATTACTAGAAAAGAGGAAGCTTTTCATGCAGAGAAGACTGGCGAAATCCAACCAAGATGTGAGTCAGAAGCAGTTACAGAAGGAAAAATGTGAACTTGTATTGGATAGAGCAGTATCTGAAGAGGAACTTGATCGAATTTCAGTTTTAATTGATGATGAAGAGCTAGAGCTGAGAGAATTACAAGCAGGACCTGATCCACTTATGTGTTCTGATCATCTTGCTGCCAGTGGTATTCTTGGCTGCTCCCTGTGTAAAGATGTGCTGTCTAAGTTCCCCCCAGATAGTGTTAAGATGAAGAAACCGATCTGCTTGCAACCTTGGGCCTCCTCTCCAGAAATTGTCAAGAAACTTTTTAAGGTATTCCATTTTCTGTATACATATGCTATTGTCGTTGATATATGCCCCTTCACTCTTGATGAGTTTGCTCAGGCATTTCATGACAAGGATTCAATGCTACTTGGTAAAATTCATTTGGCTCTTCTCACACTTCTTCTATCTGACATCGAAGTGGAGCTTACTGGTGGATTTTTGGCTCATTTAAATAAGTCATGCAATTTTCTTGCATTGCTTCACTCGGTTGAAAATCAAGAATATGCACTAGACTTCTGGAAAAGATCTCTAAATCCTCTCACATGGATAGAGGTACTTCGTCAAGTGTTGGTTGCTGCCGGCTTTGGTTCAAAGCAAGGTGCTTTACGAAGAGAAGCCCTTAACAAGGAATTGAATCTCCTAGTAAACTATGGCGTACGAGCCGGCACATTGAAGGGCGAGTTGTATAAAATCTTGTCTGAGCAAGGAAACAATGGGTCAAAAGTATCTGATCTGGCAAAGTCAACGCAGATTGTTGAATTGAAGCTTGCCAGCACAACGGAGGAACTGGAGTCTTTAATATGTTCAACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCATCTGCATATCGATTACGTATGAGCTCTGTCAGGAAGGACATTGATGAATTTCAGTCAGATACGGAGGACTCTGGGACTGTTGATGATGAACGTAATGACATTAACACGAGTAGCAGTGGTGAAGATTTTGAATGTGATTCAGTGAACTCCAATTTAAGAAAATTGAAGTGTGCAAACAATTATAAAATTAAAAATAAAATGCTAACAGTATCCACTGAAATTGATGAGAGCCATCCGGGAGAAGTGTGGTTGTTAGGACTAATGGAGAGTGAATATTCGGATTTGAGCATTGAAGAAAAGTTGAATGCACTAGTGGCTCTAACTGATCTTCTTTCTTCTGGATCTAGCATCAGGATGAAGGATCCAACAAAAGTTACAACTGATTACAATTCTAGCATCCGATTACGTGGTTCTGGAGCAAAAATAAAGAGGTCGTTAGTAAAGAAGCCTGGGTCATATTGGAACCAGATTGGTCTAATGCAATATGCTAAAGGGGGGCACTCATCATTGAATTCTCACTCCTGTCCAGTGGATTCCTCATTATTAATCTCAAATATCTACAGTCATAAGGAATCCTTTGGGAAGAGAAAAGAAGCAAAAGAAACAGGTTCAACTGATTCACACCCTATTCAATCAGTGTTTTTGGGATCTGATCGTAGGTACAATACATACTGGCTTTTCTTGGGCCCTTGTAATGTGGATGACCCTGGCCATAGGAGGGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCCTTGTGTGCCTTGTTATCAGTTTTGGATGATAGAGGTAAACGGGAGGCAATTCTTATTGAATCTTTGGAGAAGCGGCAAGCATATCTTTGCAGAGCTATGTCCAGGATTACAGTTAATTGTACTGGAAGTGGTCATATGTCACATTCTGATCAATCTGAGCTTGATATGATCATGGAGGACAGTTATTCTCCAGTATCTGATGTAGACAACCTGAGCCTGAATGATACTGCAAAAGACACTCTGCCTTCAGCTGGGGCTGTGGTAATCGAAGCTGGAAAGAAGGGAGAGGAACGAGTGCAAAAATGGATCCGTCTTCAAGCATATGATTCGTGGATTTGGAATTCCTTTTATTTAAATCTTAATGTCGTGAAATATGGTAGAAGGTCTTATATTGATTCTCTGGCCAGATGTGAAAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATTTGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACACAGCCACATGCAAGGAGAAAGACGACAGCAACACATTTCCAAACCACAAAGTCTTATCCTCACAGATCCAATCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCAGTAGATGCCCTGGTGGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGGTCAGACGACTCAGACGCACCTCAACTTTAGTTGAGCTTTTGCAGGTTGTTGCTGATTTTGTTGGTGCCATCAATGAGGATTGGTTATTTCAATGCAATTTTCTGGATGGTGTGGTTGATGAAATAATTGCATCTTTTGCATTTATGCCCCATACTTCATCAGCTCTTGCTCTGTGGTTAGTGAAGTTGGATGCCATAATTGCTCCCTATCTGGACAGAGTCCAACCTCTGAAGAAGCGAGAAATCAGTAAAAGGTCACGTATTCCATTTATAATTTATGGAGATTCTGAGGAATTGATGGCTTATAGTCTGTGTCTCCTCTCATATGGCAAGTTGATTTCTAAGACATCTATAATTGACGATAGACAAAAAGACCACATGGATTACGAAAGTAGCAGTTGGATTTGGGACGGCGTATACTACTACCCACATCTCTTTGGTGGACTAATGCTCACAGCAGCCTTGTTGGGCCTGTCAACGAGCTATTTTGGCGGGATTGGAGTTCCTTCTTTGGCATGCTCCTGGTCTGATTTAGGGAATTTCCACAAAAAGAAATGTGAGAAGAAGCGCATTCGGGTTTACATGGATGGATGTTTCGATCTTATGCATTACGGCCATGCTAATGCACTAAGACAAGCAAAAGCTCTAGGAGATGAATTGATTGTGGGTGTTGTGAGCGATGAGGTGATCATGGCCAATAAAGGTCCACCCGTCTTGACTATGGAAGAGAGGCTGGCCCTTGTCAGTGGATTGAAGTGGGTGGATGAAATCATAACCAATGCACCTTATGCGATTACTGAACAATTCATGAATCGTCTCTTTCATGAATACAAAGTTGACTATATCATACATGGAGATGACCCTTGCTTGCTTCCAGATGGAACAGATGCTTATGCCTTGGCCAAGAAAGCTGGCCGTTACAAGCAAATTAAACGCACTGAAGGAGTTTCCAGCACAGATATTGTAGGAAGAATACTTTATTCTCTAAGAGATACAGGAATTTGTGATGATCAGCATAACAGTACTGATGTAAGACCTAAAGAAGAAAACCATTTGAAGGGTGCCCACATATCCCAATTCCTACCAACTTCCCAACGTATTGTCCAGTTTTCAAATGGCAAGGGGCCTGGGCCGAATGCTCGCATAATATACATTGATGGGGCATTTGATCTCTTCCATGCCGGGCATGTTGAGATTCTTAAGAGGGCTAGGGAGCTTGGGGATTTCCTTCTAGTTGGTATCCACTCAGATGAGACAGTGAGTGAATATCGAGGTTGTCACTATCCAATTATGCATTTGCATGAGCGTAGTCTAAGTGTGCTGGCTTGCCGTCATGTTGATGAGGTCATTATTGGTGCTCCTTGGGAAATTACAATAGACATGATTACAACTTTCAATATCTCATTAGTTGTGCATGGGACTGTTGCTGAGAACTCGTTAAATAGAGATAGTAATCCATATGAAGTTCCAAAGACTATGGGAATATTCCACTTGCTTGAAAGCCCAAAAGACATAACCACTACATCAGTAGCCCAAAGGATAATGGCCAATCATGAAGCTTACTTGAAACGCAATGCTAAGAAGACTAAGAGTGAGAAGAGATACTATGAAGAGAAAAAATATGTCTCTGGAGACTAG 4830 0.4118 MGVQRKTPSQLQALDTFYTEEKYPTQREIEDYAAALGLTDKQVRDWFIEKRRREKRENGVLVPKCYSPGKKLPTHNGKDILGVAGSRKIQKRDLSNQKANAPSSRSNMALTRNARKKKKHKCLQELFTADYILKKVFRKDGPPLGEEFDFLPSGALHHSGPKNSTANQDDQGSTKRRKVSKSAIRCPPDSNKKAPVKKHGIGKGLMTVWRATNPGAGDIPSGFGFGDSEVSLISKSIQQKPVREKNPRKTLIMTRRPKNKLENQGNKLLEKRKLFMQRRLAKSNQDVSQKQLQKEKCELVLDRAVSEEELDRISVLIDDEELELRELQAGPDPLMCSDHLAASGILGCSLCKDVLSKFPPDSVKMKKPICLQPWASSPEIVKKLFKVFHFLYTYAIVVDICPFTLDEFAQAFHDKDSMLLGKIHLALLTLLLSDIEVELTGGFLAHLNKSCNFLALLHSVENQEYALDFWKRSLNPLTWIEVLRQVLVAAGFGSKQGALRREALNKELNLLVNYGVRAGTLKGELYKILSEQGNNGSKVSDLAKSTQIVELKLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSSVRKDIDEFQSDTEDSGTVDDERNDINTSSSGEDFECDSVNSNLRKLKCANNYKIKNKMLTVSTEIDESHPGEVWLLGLMESEYSDLSIEEKLNALVALTDLLSSGSSIRMKDPTKVTTDYNSSIRLRGSGAKIKRSLVKKPGSYWNQIGLMQYAKGGHSSLNSHSCPVDSSLLISNIYSHKESFGKRKEAKETGSTDSHPIQSVFLGSDRRYNTYWLFLGPCNVDDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREAILIESLEKRQAYLCRAMSRITVNCTGSGHMSHSDQSELDMIMEDSYSPVSDVDNLSLNDTAKDTLPSAGAVVIEAGKKGEERVQKWIRLQAYDSWIWNSFYLNLNVVKYGRRSYIDSLARCESCHDLYWRDERHCKICHLTFELDFDLEERYAIHTATCKEKDDSNTFPNHKVLSSQIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWVRRLRRTSTLVELLQVVADFVGAINEDWLFQCNFLDGVVDEIIASFAFMPHTSSALALWLVKLDAIIAPYLDRVQPLKKREISKRSRIPFIIYGDSEELMAYSLCLLSYGKLISKTSIIDDRQKDHMDYESSSWIWDGVYYYPHLFGGLMLTAALLGLSTSYFGGIGVPSLACSWSDLGNFHKKKCEKKRIRVYMDGCFDLMHYGHANALRQAKALGDELIVGVVSDEVIMANKGPPVLTMEERLALVSGLKWVDEIITNAPYAITEQFMNRLFHEYKVDYIIHGDDPCLLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRILYSLRDTGICDDQHNSTDVRPKEENHLKGAHISQFLPTSQRIVQFSNGKGPGPNARIIYIDGAFDLFHAGHVEILKRARELGDFLLVGIHSDETVSEYRGCHYPIMHLHERSLSVLACRHVDEVIIGAPWEITIDMITTFNISLVVHGTVAENSLNRDSNPYEVPKTMGIFHLLESPKDITTTSVAQRIMANHEAYLKRNAKKTKSEKRYYEEKKYVSGD 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2368 1609 MobiDBLite consensus disorder prediction 596 617 - -
Glsi01g2368 1609 CDD homeodomain 4 58 IPR001356 GO:0003677
Glsi01g2368 1609 Pfam DDT domain 381 434 IPR018501 -
Glsi01g2368 1609 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 659 698 IPR028942 -
Glsi01g2368 1609 CDD CCT 1253 1395 IPR041723 -
Glsi01g2368 1609 MobiDBLite consensus disorder prediction 89 117 - -
Glsi01g2368 1609 Pfam Cytidylyltransferase-like 1258 1386 IPR004821 GO:0003824|GO:0009058
Glsi01g2368 1609 Pfam Cytidylyltransferase-like 1448 1550 IPR004821 GO:0003824|GO:0009058
Glsi01g2368 1609 MobiDBLite consensus disorder prediction 148 199 - -
Glsi01g2368 1609 SUPERFAMILY Nucleotidylyl transferase 1445 1578 - -
Glsi01g2368 1609 SUPERFAMILY Homeodomain-like 5 57 IPR009057 -
Glsi01g2368 1609 Pfam Homeodomain 6 56 IPR001356 GO:0003677
Glsi01g2368 1609 ProSiteProfiles 'Homeobox' domain profile. 7 57 IPR001356 GO:0003677
Glsi01g2368 1609 NCBIfam cytidyltransferase-like domain 1446 1513 IPR004821 GO:0003824|GO:0009058
Glsi01g2368 1609 NCBIfam cytidyltransferase-like domain 1256 1320 IPR004821 GO:0003824|GO:0009058
Glsi01g2368 1609 MobiDBLite consensus disorder prediction 596 624 - -
Glsi01g2368 1609 CDD ECT 1443 1592 - -
Glsi01g2368 1609 MobiDBLite consensus disorder prediction 95 110 - -
Glsi01g2368 1609 SMART testlast3 378 437 IPR018501 -
Glsi01g2368 1609 ProSiteProfiles DDT domain profile. 378 437 IPR018501 -
Glsi01g2368 1609 SUPERFAMILY Nucleotidylyl transferase 1256 1389 - -
Glsi01g2368 1609 PANTHER HOMEOBOX PROTEIN SIX 271 1137 - -
Glsi01g2368 1609 SMART HOX_1 1 61 IPR001356 GO:0003677
Glsi01g2368 1609 Gene3D HUPs 1240 1422 IPR014729 -
Glsi01g2368 1609 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 791 864 IPR028941 -
Glsi01g2368 1609 Gene3D - 2 60 - -
Glsi01g2368 1609 Gene3D HUPs 1423 1585 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2368 Glsi-ChrGlsi01 86333801 86360226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2368 1236 1609 Acyl Lipid Metabolism Gene Families AT2G38670 68.653 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi01g2368 CTP_transf_like 6.8e-16 CL0039