Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2349 ATGTGTTCCGTCAATCCCAGGTTGAAGAGGGAAGACTGTAAACGAACAAAACACGATCCCAACTTCTCTGATTGGAAGATTCTCATTGGCCCTTCTGATTGGGAGGACTATTCTCAAGGGAAAGAAGGATCAGCTAAATACAGAATTCATAACCTCCCTATAAAATCGAGCCCAGGAGTGTATGAGCTCGGGATTGCTGTTTCTCGCAGTGGGTTAGGGCGTGAGGTTAACAGGCTTGACCCAAACCGTATTGTTGTGGTTTACCTTGGACAGGCTGACAATGTGAGAACACGCCTCCAGCAATATGGTCGAACAGGAGCTCATTTGGGCAATAACACTTCAACTTATTCCTCAGATGATTGTAATCCTGCTTCTATCCAAAAAGGGCAGGGAGTGTTTGAGGAGATATTGTCAAAAGGCTATCCAGTTATTTATAGATGGGCTCCTATGAAAAACAAGGAAGATGCCAAGAAAACAGAAAGTCAGTTGCTCAATGGTTTTGATTATGCGTGGAACATAAGCAATAATGGTACAAGGCGTTCTGATGATATTCTTCGGAAGCTTAACAAAATTGCTTCAGGCTCTAGAACATTTTCAAATGTGGATAGGGTGCTTCTACCTTTCACTCAGAAGCCAGTGGGTATCCAAATTGAATCAAGCAAGCCGCATCTGCCAGATGACAAATTACATGATGTAGACAAAGGCCGCTATAATTTCTTACCTGGAGTATACAAATTTAACAGAATATCTCCTAGGATAGTTCAGGATATCACCAGTGTCATTCAGGAGAATACTACTAGATTTTGTGGAGTGGCCTTGGAAGATGGTTCTGTTTGCAGAAGACCACCAGTTGAAAGAAGACTGAGGTGTTCTGAACATAAAGGAATGAGAGTAAATGGGTCCACTGCGAAAACAATTGGGGCAATGAAATCAGAAAACATTTTGGACCTAGAATCCAATGTACATGGTGGCAGTGGTTATGGTGAACATTTTGGACCTAGAATCCAATTTAAGTGTCCTCTTGATGAGAGCATCACCAATACTACTAGATTTTGTGGAGTGGCCATGGAAGATGGTTCTGTTTGCAGAAGACCACCGGTTGAAAGAAGACTGAGGTGTTCTGAACATAAAGGAATGAGAGTAAATGGGTCCACTGCGAAAACAATTGGGGCAATGAAATCAGAAAACATTTTGGACCTAGAATCCAATGTACATGGTGGCAGTGGTTATGGTGAACATTTTGGACCTAGAATCCAATTTAAGTGTCCTCTTGATGAGAGCATCACCAATACTACTAGATTTTGTGGAGTGGCCATGGAAGATGGTTCTGTTTGCAGAAGACCACCGGTTGAAAGAAGACTGAGGTGTTCTGAACATAAAGGAATGAGAGTAAATGGGTCCACTGCGAAAACAATTGGGGCAACGAAATCAGAAAACATTTTGGACCTAGAATCCAATGTACATGGTGGCAGTGGCTATGGTGAACATTTTGGACCTAGAATCCAATTTAAGTGTCCCCTTGATGAGAGCATCACCAATATTTGTGGAATCATTTTGAATGATGGCTCCCCTTGTAGAAGACAACCTGTTAAAGGGAGAAAAAGGTGTCATGAGCACAAAGGGAGGAGAATTCTTGTCTCTTATGAATAA 1650 0.4194 MCSVNPRLKREDCKRTKHDPNFSDWKILIGPSDWEDYSQGKEGSAKYRIHNLPIKSSPGVYELGIAVSRSGLGREVNRLDPNRIVVVYLGQADNVRTRLQQYGRTGAHLGNNTSTYSSDDCNPASIQKGQGVFEEILSKGYPVIYRWAPMKNKEDAKKTESQLLNGFDYAWNISNNGTRRSDDILRKLNKIASGSRTFSNVDRVLLPFTQKPVGIQIESSKPHLPDDKLHDVDKGRYNFLPGVYKFNRISPRIVQDITSVIQENTTRFCGVALEDGSVCRRPPVERRLRCSEHKGMRVNGSTAKTIGAMKSENILDLESNVHGGSGYGEHFGPRIQFKCPLDESITNTTRFCGVAMEDGSVCRRPPVERRLRCSEHKGMRVNGSTAKTIGAMKSENILDLESNVHGGSGYGEHFGPRIQFKCPLDESITNTTRFCGVAMEDGSVCRRPPVERRLRCSEHKGMRVNGSTAKTIGATKSENILDLESNVHGGSGYGEHFGPRIQFKCPLDESITNICGIILNDGSPCRRQPVKGRKRCHEHKGRRILVSYE 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2349 549 Pfam GIY-YIG domain-containing protein 22 185 - -
Glsi01g2349 549 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 428 480 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2349 Glsi-ChrGlsi01 86147951 86151321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2349 352 544 HRT Transcription Factor Family AT5G56780 29.825 8.14e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Glsi01g2349 None None None