Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2348 ATGGTTGAAAGGATAGAGGTAACTATAACATTTGACTTAAGTTGTGATATTATTGACGGAATAGGGTTTAAAGTTTTGGGTTCAATGTCATTCTCTACAACTTTAAGTAGTGAAGGCGCAAAGATTGCGGATTTGGAAGCTTCAAAATGCGTTAACAACGGTCATATGAGGGCGAAGCCCAAGCGAGTAATGGGAGCGGGAGATCTGTGTTCCGTCAATCCCAGGTTGAAGAGGGAAGACTGTAAACGAACAAAACACGATCCCAACTTCTCTGATTGGAAGATTCTCATTGGCCCTTCTGATTGGGAGGACTATTCTCAAGGGAAAGAAGGATCAGCTAAATACAGAATTCATAACCTCCCTGAAAAATCGGGCCCAGGAGTGTATGAGCTCGGGATTGCTGTTTCTCGCAGTGGCTTAGGGCGTAAGGTTAACAAGCTTGGCCCAAACCGTATTGTTGTGATTTACCTTGGACAGGCTGACAATGTGAGAACACGCCTCCAGCAATATGGCCGTACAGGAGCTCATTTGGGCAATACCACTTCAACTTATTCCTCAGATGATTGTAATCCTGCTTCTATCCAAAAAGGGCAGGGATTGTTTGAGGAGATATTTTCAAAAGGCTATCCAGTTATTTATAGATGGGCTCCTATGAAAAACAAGGAAGATGCCAAGAAAACAGAAAGTCAGTTGCTCAGTGTTTTTGATTATGCGTGGAACACAAGCAATAATGGTACAAGGCGTTCTAATGATATTCTTTGGAAGCTTAACAAAATTGCTTCAGGCCCTAGAACATTTTCAGATGTGGCTAGGGTGCTTCTACCTTTCACTCAGAAGCAAATGGGTATCCAAATTGAATCAAGCAAGCCGCATCCGCCAGATGACAAATTACATGATGTAGACAAAGGCAGCTATAATTTCTTATCTCGAGTATTCAAATTTAACAGAACATCTCCTAGGATAGTTCAGGATATCACCAGTGTCGTTCAGAAGAATACTTCTAGATTTTGCGGAGTGGCCTTGGAAGATGGTTCTGTTTGCAGAAGACCACCAGTTGAAAGAAGACTGAGGTGTTCTGAACATAAAGGAACGAGAGTAAAGGGGTCCATTGTCAAAACAATTGGGGCAATGAAATCAGAGAACATTTTGGACCTAGAATCCAATGTACATAATGGCAATGGCTATGGTGAACAAAATGTCAGCCGTGATGTGGAAGACCCTCCTCAAACAGCATTTGAGAGTCCTCTTGATGTGAGCATCACCAATATTTGTGGAATCATTTTGAATGATGGCTCCCCTTGCAGAAGACAACCTGTTAAAGGGAGAAAAAGGTGTCATGAGCACAAAGGGAGGAGAATTCATGTTACTATGAATAAATCCGTAGTAGTTGGAAATTCAGAGTTTCTGCATAGCGTTGTCTCAGAACCTAATGCTGATAATGCTAAATGTGGGCACAAGTGCGATCAATAA 1470 0.419 MVERIEVTITFDLSCDIIDGIGFKVLGSMSFSTTLSSEGAKIADLEASKCVNNGHMRAKPKRVMGAGDLCSVNPRLKREDCKRTKHDPNFSDWKILIGPSDWEDYSQGKEGSAKYRIHNLPEKSGPGVYELGIAVSRSGLGRKVNKLGPNRIVVIYLGQADNVRTRLQQYGRTGAHLGNTTSTYSSDDCNPASIQKGQGLFEEIFSKGYPVIYRWAPMKNKEDAKKTESQLLSVFDYAWNTSNNGTRRSNDILWKLNKIASGPRTFSDVARVLLPFTQKQMGIQIESSKPHPPDDKLHDVDKGSYNFLSRVFKFNRTSPRIVQDITSVVQKNTSRFCGVALEDGSVCRRPPVERRLRCSEHKGTRVKGSIVKTIGAMKSENILDLESNVHNGNGYGEQNVSRDVEDPPQTAFESPLDVSITNICGIILNDGSPCRRQPVKGRKRCHEHKGRRIHVTMNKSVVVGNSEFLHSVVSEPNADNAKCGHKCDQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2348 489 Pfam GIY-YIG domain-containing protein 90 253 - -
Glsi01g2348 489 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 419 485 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2348 Glsi-ChrGlsi01 86131450 86147862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2348 76 457 HRT Transcription Factor Family AT5G56780 43.223 4.73e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Glsi01g2348 None None None