Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2332 ATGACTATTTCTAATGGATTCTTCCCATGGTTGATGATTGGTCTTACAATTTTAGTCCATGGACAGCAACAAACAGGGTTCATAAGCATTGATTGTGGAGGTCGAGAGAATTATGAATACACAGATGACACCAATAAAATTAAGTACAACACAGATGGAGCTTACATACTAACAGGGGTCAACAAAAACATCTCCTCCCAATATGCATACCCTAACAATCCCAATCTGCCATATCCACTTTCAGATCTCAGAAGTTTTCCTCAGGGAAACAGGAATTGTTACACCATGAAAGCTGGAGGAAGAGGCAGTCTATATTTGGTAAGGGCTCATTTCTTGTATGGAAACTACGATGGAGAAAACAAGCCACCAGAATTCGATCTCTATGTCGGTGTCAATTTCTGGTCCTCTGTGAAATTTAGAAATGCTTCGGAGCAAGTCATGATGGAAGTAATCAGTGTGTCAGTATCAGAGGAGATTAATGTTTGTCTTGTGAACAAGGGACTGGGAACTCCTTTTATCTCAGCATTGGAACTTAGACCATTGAATAGCTCTATTTATGATACTGAGTTTGGATCATCTGCTCTGTTGTTACTTTTCAAAAGATGGGACATTGCATCACTCAATGGAAGTGGTAGATATGAAGACGATATTTATGATAGAATTTGGTCCCCCTACAGCTCCTCTTCCTGGGATTCTGTCAACACTTCTTCACTAATTAATGGCAATGACAATGGCTATAGAGCACCATTTGAAGTCATCAGGACTGCTGCTACACCCAGGAACGCTAGTGCTCCTTTGGAATTTTCCTGGATCCCAACTGATCCAAATTCTAAATTTTATGTCTACTTGTACTTTGCTGAAGTGGAGAAGCTAGAGAAAAAGCAACTAAGGAAATTCAATATATTCTGGAATGGAGGATCTCCATTATTTGGAAATGGACCCATAGTCCCACGTTACTTACAAGCAGACACTGTATCTAATTCGAAATCCTTGGTGGGAAATGAACATCGAATTTCTATTTACAAAACACAAGATTCAAGCCTGGCACCCATCCTCAATGCAGTTGAGATATATGTGGTAAGAGAGCTGGAAGCACTCCCAACATTTGAACAAGATGTTGATGCTATCATGGATATCAAGGAAAAATATCGAGTTCAACGAAATTGGGTGGGTGATCCTTGTGAGCCAAAGAAGTACAATTGGGAGGGTTTGAAATGCAACTATAGCAATTCACTTCCTCCGCGAATCATATCACTGAATTTAAAAGGCAACCAGCTGTCAGGTTCAGTCCCTCCCGTTCTTGTCGAAAGATCAAGGGCTGGATTACTTACTCTAAGGTTGGATGACCAAAATATTTGTGGCTCAAACACGTGCCACAAAAAGAAGAATATTGCTGTTCCCATTGCCGCTTCCATATCATCAGTTCTAGTTCTGTTGATTGCTTTCATTCTTACCTGGATACTAAGAAATAAACGGTCAGATAAGGCCAACATAGGAGGAGGAATTATAGCATCAAAGAAGTGGCGGTATACTTATGAGGAGGCAGAGCTCTTGATGACAGTTCATCATAGAAATTTGGTCTCCTTCATTGGTTATTGCGATGATGATAACAAGATGGCACTCATTTATGAGCACATGGCCAATGGCAACCTGAAAAATTATCTCTCAGATAGAAATTCACATAGCTTGAATTGGGAAGGAAGACTTGAGATAGCAATTGATGCTGCACAGGGATTGGAGTACCTGCACCATGGATGCAAGCCGCCTATAATACATAGAGATGTGAAGACAGCCAACATTCTATTGAGTGAAAACTTGGAAGCTAAGATTGCTGATTTGGGCCTCTCCAAGGTGTTTCAGAATGATACTATAAATGAAGAATCTGCAGTCATGGGTACCACGGGCTACCTTGACCCAGAGTACTACAAATCACGCAAGTTGAATGAGAAAAGTGATATTTATAGCTTTGGAATAGTTGTATTGGAGCTAATCACCGGTCAGCCAGCAGTGTTAAAAGGAGAGGAATTAATGCACATACTTGAGTGGGTAAGACGTGAACTTGAAAGAGGGGACTTGAGCAGAATTGTAGATCCCAGGCTGGAAGGCAAATTTAGTGCGACTTCTATGGAAAAAGCTTTAGGAGTGGCAATGGCATGCACCCCACCAACCTCCATTCATAGACCTACAATGAGTTCGGTGGTGGCAGAGCTAAAACAGTGTTTGGAAATGGAATTGCCTTGTCACCCTGAAACATTTGAGGTACCAAGGCAGATTTATAGTGAATTATATAGTTCGTCTGAACCATATTCCTTGGATACTGAATCCATCACCTATCCTTTTGCAAGGTAG 2349 0.4091 MTISNGFFPWLMIGLTILVHGQQQTGFISIDCGGRENYEYTDDTNKIKYNTDGAYILTGVNKNISSQYAYPNNPNLPYPLSDLRSFPQGNRNCYTMKAGGRGSLYLVRAHFLYGNYDGENKPPEFDLYVGVNFWSSVKFRNASEQVMMEVISVSVSEEINVCLVNKGLGTPFISALELRPLNSSIYDTEFGSSALLLLFKRWDIASLNGSGRYEDDIYDRIWSPYSSSSWDSVNTSSLINGNDNGYRAPFEVIRTAATPRNASAPLEFSWIPTDPNSKFYVYLYFAEVEKLEKKQLRKFNIFWNGGSPLFGNGPIVPRYLQADTVSNSKSLVGNEHRISIYKTQDSSLAPILNAVEIYVVRELEALPTFEQDVDAIMDIKEKYRVQRNWVGDPCEPKKYNWEGLKCNYSNSLPPRIISLNLKGNQLSGSVPPVLVERSRAGLLTLRLDDQNICGSNTCHKKKNIAVPIAASISSVLVLLIAFILTWILRNKRSDKANIGGGIIASKKWRYTYEEAELLMTVHHRNLVSFIGYCDDDNKMALIYEHMANGNLKNYLSDRNSHSLNWEGRLEIAIDAAQGLEYLHHGCKPPIIHRDVKTANILLSENLEAKIADLGLSKVFQNDTINEESAVMGTTGYLDPEYYKSRKLNEKSDIYSFGIVVLELITGQPAVLKGEELMHILEWVRRELERGDLSRIVDPRLEGKFSATSMEKALGVAMACTPPTSIHRPTMSSVVAELKQCLEMELPCHPETFEVPRQIYSELYSSSEPYSLDTESITYPFAR 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2332 782 SMART serkin_6 477 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2332 782 Gene3D Transferase(Phosphotransferase) domain 1 547 748 - -
Glsi01g2332 782 Gene3D Ribonuclease Inhibitor 364 473 IPR032675 -
Glsi01g2332 782 ProSiteProfiles Protein kinase domain profile. 419 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2332 782 PANTHER OS07G0107800 PROTEIN-RELATED 28 422 - -
Glsi01g2332 782 SUPERFAMILY Protein kinase-like (PK-like) 506 737 IPR011009 -
Glsi01g2332 782 Pfam Malectin-like domain 30 359 IPR024788 -
Glsi01g2332 782 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 546 748 - -
Glsi01g2332 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Glsi01g2332 782 Gene3D Phosphorylase Kinase; domain 1 492 546 - -
Glsi01g2332 782 Pfam Protein tyrosine and serine/threonine kinase 510 684 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2332 Glsi-ChrGlsi01 86031924 86035843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2332 12 767 Receptor kinase-like Gene Family AT4G29180 43.793 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Glsi01g2332 Malectin_like 9.3e-107 CL0202