Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2330 ATGATGCTCGGAGAGCCGCATCGCGCCAATCCAACGGTCCACGTTCCTCCCTGGCCGGTCCTCGATGATACCATGCCCGACATGTACTCCCCTTACCCGGTGAGTGGTGTCTCCATCAACTCCGACGGCAATGTCAGCACTGGCGATTACTCTCCCCTTTACTTGCAAGAGGCACTGACAGCCCTCCAGCGTTATCTGCCGCCCAACGACACCGATTTTGATTCCGACTCCGAGATTCTGGGTCGGGAGTCCGATGCGCCGGTGGATGCCTACTCCTGCGATCATTTTCGCATGTTCGAGTTCAAGGTGAGAAGGTGCGCACGTGGCAGGTCGCATGACTGGACCGAGTGTCCTTATGCTCATCCCGGCGAGAAGGCTCGCCGGAGGGACCCGAGGAAGTTTCACTATTCTGGTACTGCTTGCCCCGAGTTTCGCAAAGGGAACTGTAAGAAGGGGGATGCATGTGAGTTTGCTCATGGGGTCTTTGAGTGCTGGCTTCATCCAGCCCGTTATCGTACGCAGCCATGCAAGGACGGCACCAGTTGCCGGAGAAGGGTGTGTTTCTTTGCTCATACGCCGGAGCAACTCAGGGTTCTGCCTCAGCAGAGTCCCCGGAGTGCCAACTCGGCCGAATCTTACGATGGCTCTCCTTTTAGGCAGGCGATCGAGTCTTGTGCAAAAACGCTGCCTTTCATGTCCTCGCCGGCGTCGATGTCCCCGCCAGCTTCGCCTCCGACGGAGTCTCCTCCTATGTCTCCGATGACACAGTCTCTGAGTCGGTCTCTGGGATCGAGCTCCATCAATGAGATGGTGGCTTCTCTGCGTAATTTGCAGCTCGGTAAGGGGAAGTCGTTACCCTCTTCTCGGAATGTTCATATGGGGTCGCCCTGTTTTGGTTCTCCTAGGGGATCGGTGCTGCGACCTGGATTCTGTAGCCTCCCTTCTACCCCTACTCAGGCGCCGACGCGTGCGGGGGCAAACTGTTTTGATATTTGGGAACAGAGTTGTGAGGAGGAGCCTGTGATGGAGAGGGTGGAGTCCGGAAGGGATATCCGGGCAAAGATGTTTGAGAAATTGAGCAAAGAGAACTCTCTGGATAGATCAGGTCCGGGTGCATCAGGTGGAGCTCCGGATGTTGGCTGGGTTTCGGAGCTGGTGAATTTAAGTTGA 1170 0.5632 MMLGEPHRANPTVHVPPWPVLDDTMPDMYSPYPVSGVSINSDGNVSTGDYSPLYLQEALTALQRYLPPNDTDFDSDSEILGRESDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSAESYDGSPFRQAIESCAKTLPFMSSPASMSPPASPPTESPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKGKSLPSSRNVHMGSPCFGSPRGSVLRPGFCSLPSTPTQAPTRAGANCFDIWEQSCEEEPVMERVESGRDIRAKMFEKLSKENSLDRSGPGASGGAPDVGWVSELVNLS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2330 389 FunFam Zinc finger CCCH domain-containing protein 66 93 161 - -
Glsi01g2330 389 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Glsi01g2330 389 MobiDBLite consensus disorder prediction 233 260 - -
Glsi01g2330 389 Gene3D - 135 199 - -
Glsi01g2330 389 PANTHER UNKEMPT FAMILY MEMBER 57 386 IPR045234 -
Glsi01g2330 389 MobiDBLite consensus disorder prediction 237 251 - -
Glsi01g2330 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 160 IPR000571 GO:0046872
Glsi01g2330 389 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Glsi01g2330 389 SMART c3hfinal6 135 161 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2330 Glsi-ChrGlsi01 86027749 86028918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2330 85 244 C2H2 Transcription Factor Family AT5G12850 56.471 1.01e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi01g2330 zf-CCCH 7.2e-06 CL0537