Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2317 ATGTCAAATTGTTTGCATTATATTTTCTATTTGTTGGTAGTTCTTCTTCTTCTTCTGCAAAATCCCACTACAATATTATGCCACACCAAGGGAGTTCGACTCAGGCATTCACCGGGGATTGGGTTATCGACCAATATGACCAGAGTCCAGTTTTCAGAACAGCAATTCATGAAATGGGTCAAATTTGTCGGTAACCTCAAACACTCTGTTTTTAAGACAGCAAAAAATAAGCTTTTTCCCTCTTACACTTTGCACGTCGCTAAGAACCCGGCGGTCGGAGATTTTTCGTCCATTCAAGAAGCCATTGATTCACTTCCATCAATTAATCTCGTGAGAGTGGTCATTAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCTATGAAAATGTTCATAACCATAGAAGGAGCAGGGGCAGATGCAACCATCGTTAAATGGGGTGACACTGCTAAAACACCTGGGCCAAGAGGGCAAGCACTGGGAACATATGGTTCTGCAACGTTTGGAGTGAATGCACCTTATTTCATTGCCAGGAACATAACATTCCAAAACACCACCCCTGTTCCTGCACCAGGCGCAGTTGGAAAGCAGGCAGTAGCATTAAGAATTTCAGCAGATAACGCAGCATTGTTGGGCTGCAAATTCTTAGGAGCACAAGACACATTGTATGATCATGTGGGTAGGCATTATTATAAGGATTGTTACATTGAAGGCTCAGTTGATTTCATATTCGGGAACGCCCTCTCTCTGTTTGAGGGATGTCACGTGCATGCCATAGCACAGAATATAGGAGCCCTAACAGCCCAAGGAAGGAGCAGTCTAATGGAAGACACGGGCTTCTCATTTGTGAACTGTAAAGTCACGGGCTCAGGAGCACTATATCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTGGTCTTTGCTTATACTTATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGCGACCCTAACCGTGAAATGACTGTATTTTATGGACAGTACAAATGCACAGGGCCAGGAGCTAGCTTCGCAGGCAGAGTTTCATGGTCAAGAGAACTCACTGACGAGGAAGCTAAACCTTTTCTTTCACTTAGTTTCATCGATGGTTCTGAATGGATCAAATTGTAG 1149 0.4421 MSNCLHYIFYLLVVLLLLLQNPTTILCHTKGVRLRHSPGIGLSTNMTRVQFSEQQFMKWVKFVGNLKHSVFKTAKNKLFPSYTLHVAKNPAVGDFSSIQEAIDSLPSINLVRVVIKVHAGVYTEKVNIPPMKMFITIEGAGADATIVKWGDTAKTPGPRGQALGTYGSATFGVNAPYFIARNITFQNTTPVPAPGAVGKQAVALRISADNAALLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNIGALTAQGRSSLMEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEAKPFLSLSFIDGSEWIKL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2317 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 74 381 - -
Glsi01g2317 382 ProSitePatterns Pectinesterase signature 2. 239 248 IPR033131 -
Glsi01g2317 382 Pfam Pectinesterase 91 376 IPR000070 GO:0030599|GO:0042545
Glsi01g2317 382 Gene3D - 80 382 IPR012334 -
Glsi01g2317 382 FunFam Pectinesterase 80 382 - -
Glsi01g2317 382 SUPERFAMILY Pectin lyase-like 79 381 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2317 Glsi-ChrGlsi01 85908217 85910655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2317 1 380 Carbohydrate Esterase AT5G47500 43.307 6.69e-106 314