Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2311 ATGACAAAATCTACTCCATTGTTACGTGTCCAAATTCCATTTTACTCCCTTTTCTCCTTCTTCCTCTTCCTGGGCTATGCAAACTCACAGTCTCCGCTGTATGATCAAGAACATGCAGTCCTATTGGAGATAAAGCAATACCTGCAAAACCCACCATTCCTCACTCACTGGACCCCATCAAATTCCTCCCACTGTTCTTGGCCAGAGATCACCTGCACCGATGGCTCTGTCACTGGACTGGCTCTGATTAACACCAACATCACCAAAGCAATACCACCTTTCATCTGTCACCTCAGAAACCTCACTTCCATTGATTTTCAATTGAATTACTTTCCTGGGGAGTTCCCAACTGCTCTCTACAACTGCTCCAGGCTGCAGCACCTCGACCTCTCGCAGAACTACTTTGTTGGTAAGATTCCAGATGACGTTGACCGATTGGCCAACCTGCGTTTTCTTAACCTTGGTGGAAACAACTTCTCCGGTGATATTCCAGCAAGCGTCGGACGGTTAAAGGAGCTAAGAAATCTTCAACTTGATCAATGTCAATTTAACGGCACTATTCCGGATGAAATAGGCAACTTGTCCAATCTTGAAGTCTTATATATGGACACTAACATCATACTCCCTCCCTCAAAGTTGCCGTCCAGCTTCACCCAGCTGAAAAAATTGAAGGAATTTCAGATGTTCGGATCGAACTTGATTGGGGAAATCCCAGAAACCATTGGAGAAATGGTGGCTCTGGAGCACTTGGATTTATCAACGAATGATTTAAGTGGGAAAATTCCCAGCGGTTTGTTTACGCTGAAGAATCTAAGCATCCTGTTTCTACAAGAAAATAGCCTATCTGGGGAGATACCTGGAGTGGTTGAAGCGTTAAACCTCACCATCCTTGATCTCTCACAGAATAATCTCTCTGGGAAAATACCTGATGGTTTTGGAAATCTCAATAAGCTAACGGGTGTGAACTTGGCTTATAATCAATTATCGGGTGAGATGCCAGAAAGCCTAGGCCGTCTTCCAGCCCTGATAGATTTTAGTTGTTTTTTCAATAATTTATCAGGTACTCTTCCTCCGGAGTTTGGCCGCCACTCAAAGCTTAGAAGATTTGAGGTTACCTCAAATAGTTTCAAGGGAAGACTGCCAGAGAACTTATGCTATTATGGCAATTTATTTCGATTAACTGCTTATGACAACAAACTGAGCGGGGAGTTGCCAGAATCCCTGGGAAATTGTAGTAGCCTGCGAGAGTTGAAAGTTAACAATAATGAGCTTTCTGGTAACATTCCCAGCAGCCTCTGGACATCTCAGCATTTGTCAACCTTAATGATCAACGAGAATAGGTTCACCGGTGAACTTCCTGAAACATTGCCTAGGAATATTTCACTCTTGGCCATTAGTTATAATCAGTTTTCTGGTCAAATTCCGGCAGGAGTATCTTCCTTGAGGAATCTGGTGGTGTTCAACGCCAGTAACAACCTCTTTAACGGAAGTATTCCACAAGAGCTAACCGGTCTTTCACAGCTAACAACTCTGTTGCTTGATCAGAACCAATTAACGGGGCCACTTCCAACAGAATTCATATCATGGAAGTCTCTAACAACTCTAAATTTGAGCCAAAATCAACTAATTGGACAAATTCCAGATGCAATTGGTCAGTTACCTGTCCTTACACAGCTGGACTTGTCAGAAAATCAATTCTCTGGCCAAATTCCACCGCAACTGAGCCTTTTGACACCCACCAATCTCAATCTCTCCTCCAATCTTTTGACGGGTAGGATTCCTAGTAAATTTGAAAATCTTGTTTATGCCCACAGCTTTCTGAACAATTCTGGTCTCTGTGCTGATACCGCAACACTAAACCTGGCCTTATGCAATTATGGTCCTCAAAGATCAAGCAAGGGCTCATCTGTGTCTCTTGCTTTGGTAATCAGCCTGGTAGTGGTAGCCTCTTCGGCGACTTTCTTCTTGTTACTCTTAATTATTAGAGTATACAGAAAAAGAAATCAGGAGTTGGATACTTCATGGAAGCTGACTTCCTTTCAGAGGCTGAGTTTCACAGAATCAAACATTGTGTCATCCATGACAGACTACAATATTATTGGCAGAGGCGGGTACGGTACAGTATACCGTGTTGCTGTCAATGATTTAGGCTATGTTGCTGTGAAGAAGATATGGAATAACAGAAAGTTAGAGCGGAAGCTTGAGAATGCATTTCTCGCAGAAGTTGAAATTTTGAGCTCTATCCGTCACAACAACATCGTGAAGTTGCTGTGCTGTATATCAAATGAGGATTGTCTGCTGCTTGTGTATGAATATCTGGAAAATCTTAGCCTTGATGGGTGGTTGCACAAGAAGAATAGGGCATCAGCAGTGTCTGGTTCAGTTCATAATGTTGTTCTTGATTGGCCAAAGAGATTGCAGATAGTCATTGGGGCTGCCCAAGGTTTGAGCTACATGCACCACGAATGCTCACCACCCGTTATTCATCGAGATGTGAAAACAAGTAACATTCTTTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTGGCAAGGATATTGATCAAGCCGGGGGAACTTGATACCGTGTCAGCTGTGGTTGGCTCATTTGGGTATATTGCTCCAGAATATGCTCAAACAAAACGAGTCAACGAAAAGGTTGATGTGTTTAGCTTTGGGGTTATCCTATTGGAACTAACAACTGGGAAAGAAGCTAATTATGGAGATGAACACTCATCACTTGCAGAATGGGCGCGGCGTCACATGCTGTTAGGAAGCAATATAGAACGAATTCTAGACGAAGAAATTAAGGAACCCATTTACTTGGATGATATGTGCAGCGTCTTCAAACTTGGGGTCATGTGTACAGCACCAGAACCAGCTAGTAGGCCTTCCATGAAGGAGGTACTGCACATATTGCGCCACTGCAGGGATTCATATAGTTATGCAGAGACGAATGTTCGTCACTATGATGTTGTTCCCCTCCTAAAGAATTCAAAAAGGGAGACTAGGTTGGATATTGATAATGATAGCTAG 3042 0.429 MTKSTPLLRVQIPFYSLFSFFLFLGYANSQSPLYDQEHAVLLEIKQYLQNPPFLTHWTPSNSSHCSWPEITCTDGSVTGLALINTNITKAIPPFICHLRNLTSIDFQLNYFPGEFPTALYNCSRLQHLDLSQNYFVGKIPDDVDRLANLRFLNLGGNNFSGDIPASVGRLKELRNLQLDQCQFNGTIPDEIGNLSNLEVLYMDTNIILPPSKLPSSFTQLKKLKEFQMFGSNLIGEIPETIGEMVALEHLDLSTNDLSGKIPSGLFTLKNLSILFLQENSLSGEIPGVVEALNLTILDLSQNNLSGKIPDGFGNLNKLTGVNLAYNQLSGEMPESLGRLPALIDFSCFFNNLSGTLPPEFGRHSKLRRFEVTSNSFKGRLPENLCYYGNLFRLTAYDNKLSGELPESLGNCSSLRELKVNNNELSGNIPSSLWTSQHLSTLMINENRFTGELPETLPRNISLLAISYNQFSGQIPAGVSSLRNLVVFNASNNLFNGSIPQELTGLSQLTTLLLDQNQLTGPLPTEFISWKSLTTLNLSQNQLIGQIPDAIGQLPVLTQLDLSENQFSGQIPPQLSLLTPTNLNLSSNLLTGRIPSKFENLVYAHSFLNNSGLCADTATLNLALCNYGPQRSSKGSSVSLALVISLVVVASSATFFLLLLIIRVYRKRNQELDTSWKLTSFQRLSFTESNIVSSMTDYNIIGRGGYGTVYRVAVNDLGYVAVKKIWNNRKLERKLENAFLAEVEILSSIRHNNIVKLLCCISNEDCLLLVYEYLENLSLDGWLHKKNRASAVSGSVHNVVLDWPKRLQIVIGAAQGLSYMHHECSPPVIHRDVKTSNILLDSQFNAKVADFGLARILIKPGELDTVSAVVGSFGYIAPEYAQTKRVNEKVDVFSFGVILLELTTGKEANYGDEHSSLAEWARRHMLLGSNIERILDEEIKEPIYLDDMCSVFKLGVMCTAPEPASRPSMKEVLHILRHCRDSYSYAETNVRHYDVVPLLKNSKRETRLDIDNDS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2311 1013 SMART serkin_6 694 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2311 1013 SMART LRR_typ_2 293 314 IPR003591 -
Glsi01g2311 1013 SMART LRR_typ_2 505 528 IPR003591 -
Glsi01g2311 1013 SMART LRR_typ_2 553 577 IPR003591 -
Glsi01g2311 1013 SMART LRR_typ_2 244 268 IPR003591 -
Glsi01g2311 1013 SMART LRR_typ_2 315 339 IPR003591 -
Glsi01g2311 1013 SMART LRR_typ_2 146 170 IPR003591 -
Glsi01g2311 1013 SUPERFAMILY Protein kinase-like (PK-like) 686 975 IPR011009 -
Glsi01g2311 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Glsi01g2311 1013 Gene3D Transferase(Phosphotransferase) domain 1 773 996 - -
Glsi01g2311 1013 FunFam Leucine-rich repeat receptor-like protein kinase TDR 312 626 - -
Glsi01g2311 1013 FunFam Kinase family with leucine-rich repeat domain-containing protein 773 992 - -
Glsi01g2311 1013 CDD STKc_IRAK 700 975 - -
Glsi01g2311 1013 SUPERFAMILY L domain-like 44 343 - -
Glsi01g2311 1013 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515
Glsi01g2311 1013 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 212 970 - -
Glsi01g2311 1013 Pfam Protein kinase domain 696 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2311 1013 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Glsi01g2311 1013 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Glsi01g2311 1013 FunFam Receptor-like protein kinase HSL1 674 772 - -
Glsi01g2311 1013 ProSiteProfiles Protein kinase domain profile. 694 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2311 1013 FunFam Receptor-like protein kinase HSL1 isoform A 34 185 - -
Glsi01g2311 1013 Gene3D Phosphorylase Kinase; domain 1 664 772 - -
Glsi01g2311 1013 SUPERFAMILY RNI-like 293 600 - -
Glsi01g2311 1013 Pfam Leucine rich repeat 526 566 IPR001611 GO:0005515
Glsi01g2311 1013 Pfam Leucine rich repeat 99 159 IPR001611 GO:0005515
Glsi01g2311 1013 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 190 290 - -
Glsi01g2311 1013 Gene3D Ribonuclease Inhibitor 211 342 IPR032675 -
Glsi01g2311 1013 Gene3D Ribonuclease Inhibitor 26 83 IPR032675 -
Glsi01g2311 1013 Gene3D Ribonuclease Inhibitor 84 210 IPR032675 -
Glsi01g2311 1013 Gene3D Ribonuclease Inhibitor 343 621 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2311 Glsi-ChrGlsi01 85873458 85876624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2311 37 1012 Receptor kinase-like Gene Family AT5G25930 51.373 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi01g2311 Pkinase 2.6e-47 CL0016