Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2302 ATGCTGCAGAAGATCTTAACCTTTGAAACTGCTTGGTTCGATGAAGAACAGAACTCTAGTGGAGCCTTATGCTCAAGGTTGAGCAACGAGGCTTCCATGGTCAAGTCACTCGTTGCAGACCGAGTCTCCTTGTTAGTCCAAACCACTTCTGCTGTCACAATTGCAATGATCATAGGACTTGTTGTGGCTTGGAAGCTTGCTCTTGTTATGATAGCTGTACAGCCACTCACAATACTTTGCTTCTATACACGAAAAGTGTTGCTCTCCGCACTTTCAACCAATTTTGTTAAGGCTCAAAATCATAGCACACAAATTGCAGTGGAAGCAGTCTATAATCATAGAATTGTAATCTCTTACGGGAGCATCACAAAAGTTCTAGAACTATTTGATGAGGCTCAAGAGGCACCAAGGAAGGAAGCCAGAAAGAAGTCCTGGCTAGCTGGCATTGGAATGGGTTCTGCTCAGTGCCTAACGTTCATGTCTTGGGCTTTGGATTTCTGGTACGGTGGTACGTTGGTGCAAAAGGGAGAAATATCAGCAGGGGATGTATTTAAGACATTTTTTGTATTGGTTAGCACAGGCAAGGTCATAGCTGAAGCTGGAAGTATGACTTCTGACCTTGCCAAGAGCTCTGCAGCAGTGGCATCCGTTTTTGGAATTCTTGATCGGCAATCACTAATTCCTAAGGCTGGGGAGGATGGCACTAGTGGGTATAAGTTGGAAAAGATAAGTGGGAAGATAGAGATGAAGAATGTTGATTTTGGTTATCCAAGCAGGCCAGGAACACCGATATTGCGCAAGTTTTGCTTGGAGGTGAAGTCAGGAACAAGTATTGGACTAGTTGGGAAAAGTGGGTGTGGAAAATCAACTGTGATTGCTTTAATACAAAGATTCTATGATGTTGAGAGAGGGTGTGTGAAAGTGGATGGCGTGGACATAAGGGAATTAGACATTCACTGGTACAGGCAGCACACAGCACTAGTTAGCCAAGAGCCGGTGATATATTCAGGCAGCATACGCGACAACATTTTGTTTGGGAAGCAAGACGCAGCAGAGAATGAAATGGTGGAGGCTGCAAGAGCTGCAAATGCTCATGACTTCATCTCAGCACTGAAAGATGGATATGAAACGGAATGTGGAGAAAGAGGAATAAAATTGTCAGGAGGGCAAAAGCAGAGGATAGCAATTGCAAGAGCCATTATTCGGAACCCAACGATACTACTGCTAGATGAGGCAACCAGTGCACTAGACGTGCAATCAGAACAAGTTGTGCAAGAAGCACTTGATAGGATTATGGTAGGCAGAACTACCATCGTGGTGGCACATAGGCTTAACACCATTAAAGAGCTTGACTCAATTGCCTATGTTGCAGACGGCAAGGTTCTGGAGCAAGGAACGTATGCACACCTTTGGCACCAGAGAGGTGCCTTCTTCAACCTTGCCACCCATCAAACTTAG 1458 0.4486 MLQKILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVTIAMIIGLVVAWKLALVMIAVQPLTILCFYTRKVLLSALSTNFVKAQNHSTQIAVEAVYNHRIVISYGSITKVLELFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGEISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSAAVASVFGILDRQSLIPKAGEDGTSGYKLEKISGKIEMKNVDFGYPSRPGTPILRKFCLEVKSGTSIGLVGKSGCGKSTVIALIQRFYDVERGCVKVDGVDIRELDIHWYRQHTALVSQEPVIYSGSIRDNILFGKQDAAENEMVEAARAANAHDFISALKDGYETECGERGIKLSGGQKQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVADGKVLEQGTYAHLWHQRGAFFNLATHQT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2302 485 Gene3D - 237 485 IPR027417 -
Glsi01g2302 485 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 247 483 IPR003439 GO:0005524
Glsi01g2302 485 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 209 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g2302 485 Pfam ABC transporter transmembrane region 1 192 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g2302 485 SUPERFAMILY ABC transporter transmembrane region 1 222 IPR036640 GO:0005524|GO:0016020
Glsi01g2302 485 ProSitePatterns ABC transporters family signature. 386 400 IPR017871 GO:0005524|GO:0016887
Glsi01g2302 485 FunFam ABC multidrug transporter SitT 237 485 - -
Glsi01g2302 485 Pfam ABC transporter 268 414 IPR003439 GO:0005524
Glsi01g2302 485 CDD ABC_6TM_Pgp_ABCB1_D2_like 1 227 - -
Glsi01g2302 485 SMART AAA_5 274 466 IPR003593 GO:0016887
Glsi01g2302 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 484 IPR027417 -
Glsi01g2302 485 Gene3D ABC transporter type 1, transmembrane domain 39 236 IPR036640 GO:0005524|GO:0016020
Glsi01g2302 485 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 480 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2302 Glsi-ChrGlsi01 85826073 85828140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2302 2 485 Calmodulin-binding Proteins AT2G36910 40.326 4.33e-115 365