Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2301 ATGATAACGCAAAAGGAAGAGAGTACCGGGCCGAAACCGCAACCTCTGCCCTGCGTGTCGAACTCGGATCAAAGACTAAGATTGCAGGTACAGCGTAAGGCAAAGGGACTACGATTACACCCAATCCCCATTTGCAACAGATGCGTGTGTCATCCACTTATATCTTCTCACACGTGTCGCACTCTTACCTGTCCTTTCTTCTCCTTTTATCGCCTCCTTCCCTTCCTCTCCTGGCCCCGGCACTTGCTCTGCTGCATGATGGAACCCTTGGAGTTGGAAGACGAAGGACTCGAACGAGTCGACTCGGTTCTCGACACGGAGTTGGCGTCCAAAAGTTCGGGTTCGGGCATTTTGTCCGTACTTAGCACCCAAGAAATCCGAAGCACCACCAACTCCGGCGACCTTCCGGGGGCTGTAGTGTCCGAATCAGTGCCGTCGCCTCCGTTGCTTGACCCTGCTCCGTCTATTGATATCGAAAGTGAAGAGGCACCGGAGGGGATGGAGGTTGACGTAACGGTGACGAGGACGGTGAGGGAGAGGTGCGTCGGGAGGAATACCAAGGGAGTGAGTTGGGGATTTACTTCGGTGATTGGGAGACGGAGAGAGATGGAGGACGCAGTTTCCGTTATTCCAGATTTCATGTCCCGCACGTGTGATCACATCGGTGGTTGTACAGCTACTGGCTCGAAATCCTCCACCGAGATCTCACCCGTTCATTTCTTCGGTGTTTACGACGGCCATGGTGGCTCTCAGGTGGCTAAATTTTGTGCCAGGCGGATGCATGATGTTATAGCTGAAGAGTGGGATCGAGGAAGGGCTGATGGCAATGAATGGCAGAGAAGGTGGGAAGCCGTATTTGTTAGTGGCTTTGAGAGGACTGACAATGAAATCCTAACAGACGCAGTTGCACCAGAAATGGTAGGATCTACTGCTGCTGTGGTGGTTTTATCTCGTTGCCAAATTATTACATCTAACTGTGGAGATTCAAGGGCTGTTCTTTGCCGCGGGACTCAAACAATCCCCTTAACAGTGGATCAGAAGCCTGATAGACAAGATGAACTCTTGAGAATTGAAGGAGGAGGAGGAAAAGTCATAAACTGGGATGGAGCAAGGGTGTTGGGAGTTCTTGCCATGTCCAGGGCGATAGGTGATCGGTACTTGAAGCCATGGATTATACCAGTGCCTGAGATAACTTTTACAACGAGAACTGACGAAGATGAGTGCTTAATTTTGGCGAGTGATGGACTGTGGGATGTGATGACCAATGAAGAGGTTGCAGAAGTCGCACGTCATATTCTCAGAAGGCGCCGCAGGTCCTTGTCAGTGGAAGAAACTTCTCCTGCACAAGTTGTTGCCGATAGCCTCACTAAGATTGCATATGGTAAAAACAGTAAAGACAACATTTCAATCATAGTTGTTGATCTGAAATCAAAGAGAAAGCGTCCTCAAAGGCCTCCTTTAGTTTTCTAG 1470 0.4986 MITQKEESTGPKPQPLPCVSNSDQRLRLQVQRKAKGLRLHPIPICNRCVCHPLISSHTCRTLTCPFFSFYRLLPFLSWPRHLLCCMMEPLELEDEGLERVDSVLDTELASKSSGSGILSVLSTQEIRSTTNSGDLPGAVVSESVPSPPLLDPAPSIDIESEEAPEGMEVDVTVTRTVRERCVGRNTKGVSWGFTSVIGRRREMEDAVSVIPDFMSRTCDHIGGCTATGSKSSTEISPVHFFGVYDGHGGSQVAKFCARRMHDVIAEEWDRGRADGNEWQRRWEAVFVSGFERTDNEILTDAVAPEMVGSTAAVVVLSRCQIITSNCGDSRAVLCRGTQTIPLTVDQKPDRQDELLRIEGGGGKVINWDGARVLGVLAMSRAIGDRYLKPWIIPVPEITFTTRTDEDECLILASDGLWDVMTNEEVAEVARHILRRRRRSLSVEETSPAQVVADSLTKIAYGKNSKDNISIIVVDLKSKRKRPQRPPLVF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2301 489 SUPERFAMILY PP2C-like 184 476 IPR036457 -
Glsi01g2301 489 CDD PP2Cc 192 475 IPR001932 -
Glsi01g2301 489 Pfam Protein phosphatase 2C 196 468 IPR001932 -
Glsi01g2301 489 FunFam Protein phosphatase 2C 51 183 483 - -
Glsi01g2301 489 SMART PP2C_SIG_2 220 475 IPR001932 -
Glsi01g2301 489 ProSitePatterns PPM-type phosphatase domain signature. 240 248 IPR000222 GO:0043169
Glsi01g2301 489 PANTHER PROTEIN PHOSPHATASE 165 475 IPR015655 GO:0004722|GO:0006470
Glsi01g2301 489 Gene3D - 180 484 IPR036457 -
Glsi01g2301 489 SMART PP2C_4 179 473 IPR001932 -
Glsi01g2301 489 ProSiteProfiles PPM-type phosphatase domain profile. 190 475 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2301 Glsi-ChrGlsi01 85821587 85825253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2301 191 485 PP2C-type Phosphatase Gene Family AT4G26080 51.111 1.04e-99 305