Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2294 ATGGCTGAGCTACCGAGCTCAGAGACAGAGACAAGCACCAACTGGTCATCACACCCTCTGTCTTCACCATCATCATCTGGGTTATCTCAGTATTTACCAAACTCTGCTTCCGAACCTTCCACTAGGGAGTCCCACTTACCCGACCCCGAACAGAGGAAGCCCAAGCGAGGTAGAGATAGCAGCAAACACCCAGTTTACAGAGGTGTCCGAATGCGGACTTGGGGCAAATGGGTATCCGAAATCCGTGAGCCCAGGAAGAAAAATCGGATCTGGCTCGGCACCTTCGCTACGCCAGAGATGGCTGCGCGTGCCCATGACGTGGCGGCACTGAGTATCAAAGGCAACTCGGCGATGCTAAACTTCCCGCAACTTGCGGATTCACTGCCCCGACCCGCTTCTAAGTCGCCCCGAGATGTTCAAGCTGCTGCTGCTAAAGCCGCTTCAATGGAGACATTTAACCCCCCAACGACGTCATTCTCATCATCGTCGCTGTCACAGTCTTCGTCTTCTTCGTCATTGGCCGGGTCTTCCAGCGGGGACCCTTCAACCCCAGAGGAACTGGGTGAGATAGTGGAGCTGCCGTCCTTAGGAACCAGTTTCGAAGCACCCGATCCAAGTACCGATTTTGTGTTTGTCGACCCGGTGGATGGGTGGCTCTATCCTCACCCATGGTATCACAACCTTTATGATGACAGGGAGTGTAGTGGGTATTTCATTGGGGATCAGATATCAATGCAAGAGATGAGAGAACTGATTGGAAATGGGAAGATCCCTGAACACCGTGATTTCGTGGAGGAAGAATATGATAGTACTGTATTGCGACGGATTCCAGGGTCACATGCTTGTGCGTAG 852 0.5258 MAELPSSETETSTNWSSHPLSSPSSSGLSQYLPNSASEPSTRESHLPDPEQRKPKRGRDSSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALSIKGNSAMLNFPQLADSLPRPASKSPRDVQAAAAKAASMETFNPPTTSFSSSSLSQSSSSSSLAGSSSGDPSTPEELGEIVELPSLGTSFEAPDPSTDFVFVDPVDGWLYPHPWYHNLYDDRECSGYFIGDQISMQEMRELIGNGKIPEHRDFVEEEYDSTVLRRIPGSHACA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2294 283 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Glsi01g2294 283 MobiDBLite consensus disorder prediction 1 42 - -
Glsi01g2294 283 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Glsi01g2294 283 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Glsi01g2294 283 CDD AP2 66 122 IPR001471 GO:0003700|GO:0006355
Glsi01g2294 283 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Glsi01g2294 283 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Glsi01g2294 283 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Glsi01g2294 283 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Glsi01g2294 283 MobiDBLite consensus disorder prediction 128 186 - -
Glsi01g2294 283 MobiDBLite consensus disorder prediction 43 66 - -
Glsi01g2294 283 MobiDBLite consensus disorder prediction 150 183 - -
Glsi01g2294 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 41 199 - -
Glsi01g2294 283 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Glsi01g2294 283 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2294 Glsi-ChrGlsi01 85728941 85732215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2294 32 224 AP2-EREBP Transcription Factor Family AT5G11590 62.245 1.20e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi01g2294 AP2 7.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g2294 01 85728941 85732215 Glsi01g2294 01 85728941 85732215 ECH