Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2285 ATGAATCAATTGGGTTTTCATCTTCTGGTTCTCTATGTCATATTCTTCAGGTTTTCCTGCAGAGCACAGACTTCAGCCAGTGATCCTTCACAAGATGCCATCTCTAATTTCCAACCAAGCCTTGCTGTTGTCATAGGAATTCTCAGTTTCATGTTTTCTTTAACATTCATTCTTCTCATTTACGCCAAATTCTGCAACAGAAGAGCTTCAGTTCATGGGGACCCAGAAAACCAGCCAGGGCTTCTCAGATCAAGGTCCAGGTTCTCAGGAATTGATAAGACTGTCGTAGAATCGCTTCCTTTTTTCAGATTTTCTTCCCTCAGAGGATCGAAGGAAGGGCTTGAATGTGCAGTGTGCTTATCAAAGTTCGAAGACGTTGAAATTCTCAGGCTTCTACCTAAATGTAAACATGCCTTTCATATCGAATGCATCGATCATTGGCTAGAAAAACATTCAAGCTGCCCTCTTTGTAGGCACAAGGTCAATCCTGAGGACCAGACGATATTTAGATACTCAAACAGTTTGAGGTTCCTTGTTAGTGGTTCAGAGCTGGGAGAGGAATCCAATATAGAGCTCTTTGTTCAGAGAGAGGAAGAACACAATGGGTCTTCAAGATTCAGTGTTGGAAGCAGCTTTAGAAAAATTGTGAAGGGTATAAAGGAAGAAGAACTGCCAATCAAGAAAGAAGCTGCAGAAAATAGTTATGGTGATGATGACAAGGTCTATCATAAGCACAAACACAAGATTGCTGTATCTGATTTTGTTTTCAGAAATCGGTGGAGCAACGTGAGCTCTTCAGACCTCATGTTTTTGAATTCAGAGATGCTAGATTCAGTAGAAAATGAGCGAATTATGAACTCAGTTTTGGAAATAGCTCCTCCTTTTACATCAGATTCTTCTGGAGATTCTAATCATATATTGAAGTATATGAATCCAGAAGAGAAAAGATCAATGTCGGATATCACAGCTGTCTCTAGATTTGGAGATTTGGGCATGAAAAAAGGAATCTTTAAAGGTTCTTCTTCACTTGATAACAATGTTAAAGAGGAAAGAATGAGGCAGATTTGGTTGCCAATTGCCAGAAGAACAGTTCAATGGTTTGTGAACAGAGAAAGAAGGTCTCCGCAATCTCAGAATAAACCACGGCCGTCAGATGTATAG 1161 0.3997 MNQLGFHLLVLYVIFFRFSCRAQTSASDPSQDAISNFQPSLAVVIGILSFMFSLTFILLIYAKFCNRRASVHGDPENQPGLLRSRSRFSGIDKTVVESLPFFRFSSLRGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHIECIDHWLEKHSSCPLCRHKVNPEDQTIFRYSNSLRFLVSGSELGEESNIELFVQREEEHNGSSRFSVGSSFRKIVKGIKEEELPIKKEAAENSYGDDDKVYHKHKHKIAVSDFVFRNRWSNVSSSDLMFLNSEMLDSVENERIMNSVLEIAPPFTSDSSGDSNHILKYMNPEEKRSMSDITAVSRFGDLGMKKGIFKGSSSLDNNVKEERMRQIWLPIARRTVQWFVNRERRSPQSQNKPRPSDV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2285 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 167 IPR013083 -
Glsi01g2285 386 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Glsi01g2285 386 FunFam RING-H2 finger protein ATL43 91 165 - -
Glsi01g2285 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 372 - -
Glsi01g2285 386 Pfam Ring finger domain 115 158 IPR001841 -
Glsi01g2285 386 CDD RING-H2_EL5-like 115 158 - -
Glsi01g2285 386 SUPERFAMILY RING/U-box 97 164 - -
Glsi01g2285 386 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2285 Glsi-ChrGlsi01 85664224 85665384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2285 37 372 C3H Transcription Factor Family AT2G20030 49.718 1.57e-103 309