Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2280 ATGGAACGGATCGTTGGCGCCAAGTACAAGCTCGGCCGCAAGATCGGAAGCGGATCCTTCGGCGAAATTTACCTTGCTACTCATATCGATACCTTCGAGATCGTCGCTGTTAAGATCGAGAATAGTAAAACAAAGCATCCACAACTGCATTATGAGGCAAAACTGTACAATATTCTTCAAGGAGGAAGTGGAATTCCTAGCATAAAATGGTCTGGCGTAGACGGCGATGACAATGTGCTAGTTCTTGATTTGCTGGGACCGAGTCTTGAGGACCTGTTTGTATATTGTGGAAGGAAGTTCTCATTGAAGACAGTATTAATGTTGGCTGATCAAATGATCACTAGAATAGAATATGTGCATTCTAAGGGATTTTTACATAGGGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCTAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAAAGATATCGGGACTCCACAACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGTAATACTCACCTCGGGATTGAGCAAAGCCGACGCGATGATTTGGAGTCACTAGGATATGTGCTTTTGTACTTTTTGAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAGCAAAAATATGATAAAATATGTGAGAAGAAAGTATCAACTCCTATTGAGGTCCTATGCAAATCTCATCCCGTAGAATTTGCTTCGTACTTTCATTATTGCCACTCTCTGACGTTTGATCAGCGACCTGATTATGGATTTTTGAAGCGCCTATTCCGGGATCTGTTTGTTCGACAAGGGTTTGAATTTGATTATGTATTTGATTGGACTCTTTTAAAGTACCAGCAGGCTCAAAAAAATAGAGTTCAGCCTCGCATATCTCCCGTTCCTGGAGCAAGCAACAGTCATGCAATGCTGATGGGTGTTGACAATCATCAAGGTGTTAATGTTTACTCAGGGGATGTCTCAGAGCGCAATAGATCTGGCAATGCTACTGGTTCTAGTGTTAAAATGCAGTTTAAATCACCAGTGGGCAAAAATTTGAGTTCAAATAATCCTCTTGACAAAAATATTTTTGAAGAAGCAAATATGCCCTCTACTTCATATTCATTTGCTGGTACCTCAAAAAGGAACTCCTTGAAGCCTTAG 1191 0.4131 MERIVGAKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLHYEAKLYNILQGGSGIPSIKWSGVDGDDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFVRQGFEFDYVFDWTLLKYQQAQKNRVQPRISPVPGASNSHAMLMGVDNHQGVNVYSGDVSERNRSGNATGSSVKMQFKSPVGKNLSSNNPLDKNIFEEANMPSTSYSFAGTSKRNSLKP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2280 396 CDD STKc_CK1_delta_epsilon 8 282 - -
Glsi01g2280 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Glsi01g2280 396 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2280 396 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g2280 396 Gene3D Transferase(Phosphotransferase) domain 1 1 319 - -
Glsi01g2280 396 PANTHER CASEIN KINASE-RELATED 8 336 - -
Glsi01g2280 396 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Glsi01g2280 396 MobiDBLite consensus disorder prediction 335 373 - -
Glsi01g2280 396 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Glsi01g2280 396 FunFam Casein kinase I isoform delta-like 1 340 - -
Glsi01g2280 396 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2280 Glsi-ChrGlsi01 85637426 85641198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2280 9 215 EF-hand Containing Proteins AT4G23650 29.577 9.95e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Glsi01g2280 Pkinase 5.5e-28 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g2280 01 85637426 85641198 Glsi01g2280 01 85637426 85641198 ECH