Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2274 ATGTCTGTGCCATTAGAGCACCACGGCTATGTAGGCTTAGCAGAGGTTCCTTCAATGGAAAGCTCAGACAAGTATTCTCAGAGGAGAAGTGGCTTAAATTTCAAGGCAACTGAGCTGCGGCTCGGCTTACCTGGGTCCGAGTCACCAGAGAGGGATTCTGGTTTGGACGACAAGAATGTGTACCCATTAGGCATGCTAAAGAGTACGGTGTCTGGGGCCAAGAGGGTTTTCTCAGACGCTATTGATGGTGGTTCTGGGAAGTGGGCTCTTACTGGGAAAGGTGGATCTGAGGTGGGTTTGGCTAAAGATTGTGGCTTATTCTCTCCCAGGGGTGTTTCTTCTGCGAAGGCTCTTGCTGGGCCTGAGTGCAGCAGCCAACAAACGGGTTTGGGTGCGTCCGTTGTGAAAGATAGTATTCCTCAGTCGCCAAAGCCGTTGCATGAGAAGAAGCCCCAGCTTACTACTCCCGCTGCAAAGAACCAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAATAAGTCGATGGCTATTCAGCCTCAAAAGAATGATGATGATGCAGAAGCTAAGTCTGGCTGCCTCTATGTAAAAGTTAGCATGGATGGTGCTCCATACCTGAGGAAAGTGGATCTCAGGAACTTTGGCAATTACATGGAACTTTCTTCAGCCCTGGAAAAGATGTTTAGTGGTTTTACAATCAGTCAATGCGGCTCCCATGGAGTTTCTAGTCGAGATAATATGAGTGAGAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCCTGGGAGATGTTCACCGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCAAGAGCGATGGAAAAGTGCAGAAGTCTCAACTAG 942 0.4809 MSVPLEHHGYVGLAEVPSMESSDKYSQRRSGLNFKATELRLGLPGSESPERDSGLDDKNVYPLGMLKSTVSGAKRVFSDAIDGGSGKWALTGKGGSEVGLAKDCGLFSPRGVSSAKALAGPECSSQQTGLGASVVKDSIPQSPKPLHEKKPQLTTPAAKNQVVGWPPIRSFRNKSMAIQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLRNFGNYMELSSALEKMFSGFTISQCGSHGVSSRDNMSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCRSLN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2274 313 SUPERFAMILY CAD & PB1 domains 190 294 - -
Glsi01g2274 313 FunFam Auxin-responsive protein 188 305 - -
Glsi01g2274 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 300 IPR003311 GO:0005634|GO:0006355
Glsi01g2274 313 Pfam AUX/IAA family 37 304 IPR033389 -
Glsi01g2274 313 ProSiteProfiles PB1 domain profile. 193 295 IPR000270 GO:0005515
Glsi01g2274 313 Gene3D - 187 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2274 Glsi-ChrGlsi01 85600875 85603430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2274 173 297 B3 DNA Binding Superfamily AT1G34170 30.000 4.54e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi01g2274 AUX_IAA 8.8e-85 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g2274 01 85600875 85603430 Glsi01g2274 01 85600875 85603430 ECH