Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g2262 ATGATGGTATATCTGTTTACTACCTTCAAATGCTTTCTCAGGTTTGTTAGTTTACTCAGAAGAGAATCTGTCTCCAAAACTTCTTGTGTAAGTGATCACCATAACCTAAAAAAAATTGAATTGTGGTTTACGGTTGACTTTTTTAATAGATTACTCATACTCTCTCATACACAAACCGTTGTATTTGTAACGAAGTTGTTATCTAAGGAGGAAGAAGAATTTGGAATTTGCGGTAAATTGTTGATTTGTTATCTCATGGGGGAAGGTGAGGGGGGTGATTGCCCTCCGAAGAATGTATCATCGGATGCTGCAGCAGCAGCGTTGCCGTCGGATGTTCCCGCAAAGAAGCTGGCGAGGCAGCTCGATTTCACGGGTTTTAGTGGTGTCTCGGGGTGTGGGGCCTTGCCAGAACACCCTCAACCGCAGCTGCAGCCTCAGTTGCAGATGGTGGCGCCGAGTCAGCCGCAGTCACGCCCACTTACACAGCAGGCGGCTGTTGTGATGCCGGTGCCACCGCAGGTTTCTCAGCCTCCAGTGAGGGTTGGGAAACCAGAATCTCCAAAATCAAGATCAAGATCCAACTTTGAAATGAAAGATGCTACTCCAAAGAAGCAAAAACAGTGCAATTGTAAACACTCAAAATGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATATTGTGAAGGGTGCAACTGTGTGAATTGCTATAACAATGTTGAAAACGAAGCTGCTAGGCGAGAAGCTGTCGAAGCTACTTTAGAACGTAATCCAAATGCATTTAGGCCAAAAATTGCAAGCAGCCCTCATGGAACACGTGATAACATGGAGGAGGCTGGGGAAGTTTTAATATTAGGAAAGCACAACAAGGGGTGCCATTGCAAAAAATCAGGATGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGCTCTGAAAATTGTAAATGCATGGACTGCAAAAATTTCGAGGGAAGTGAAGAGAGACAAGCTTTGTTCCATGGAGATCAAAATAATAACATGGCATATATTCAGCAGGCGGCAAATGCTGCCATAACTGGAGCAATTGGATCTTCTGGGTATTCATCCCCTCCAGTATCAAAGAAAAGAAAAGGTCAAGAACTCCTCTTTGGGCCAACAGCCAAGGATCCGTCCGTTGGCAGGCTTGGGCAATTTCAACAGGTAAACCATGTCAAAGGTCCTGCACCCTCCTCATCCTCGTCTCCTATCCCTGGTGCTCGTGTTGGAAGTGCAGCATTAGGCCCCTCAAAATTTACATACAGGTCTCTCTTAGCAGACATCATACAACCACAGCACTTGAAGGAGCTTTGCTCAGTTCTGGTGCTAGTATCAGGACAAGCTGCTAAGACACTTACTGACCAGAAAATTTTGATGGAAAAGAATACAGAAGATCAGATGGAAACTTCCGTTGCTTCTTCAACTCAAGAGCAATTGCCAAGTGGAAAGGAAGCTGATGTTGAGAAAGCTATGGCTGATGATTGTTCAAGTGCAAACCAAACAGATAAAATCAGCCCAGATAATTCCAGTTCAGATGGTGCTGATGTTCCAAAAGGGAGGCCGATGTCTCCTGGAACTTTAGCCTTGATGTGTGATGAGCAAGATACGATGTTCATGACTGCTGCCTCCCCTAATGGGTCAATGGCGCATGCCTGCAACACATCTTTGCATTCTCCTTATGGACAAGGCGTGACAGAGGTTTACGCAGAGCAAGAAAGGATTGTATTGACGAAGTTTAGAGATTTTCTTAATAGGGTTATCACTATGGGAGAAATAAACGAAACAAAGTGTTCTTCATTAGCCAGAAGTGAATTACAGAATCAGAAGGACTCAATCAACAATGGCACTGGAAATCCAGGTACAGAAACAGTGCATCATCAGGGAACCACTAGCAATGGTGTTGCCAAAGCTGTTGTGCCACCCGTGGCCACTAGTATGAACCTGGTTACTTCAGCGGCTCTTATCCCTAGTAATCATGTTCCTGAAAATGGGGAAAGTAAGCCTAAGATTGAAAAGGAGACATTAAAAGATTCTAGACAGAACGATGTGCAGTGA 2082 0.4424 MMVYLFTTFKCFLRFVSLLRRESVSKTSCVSDHHNLKKIELWFTVDFFNRLLILSHTQTVVFVTKLLSKEEEEFGICGKLLICYLMGEGEGGDCPPKNVSSDAAAAALPSDVPAKKLARQLDFTGFSGVSGCGALPEHPQPQLQPQLQMVAPSQPQSRPLTQQAAVVMPVPPQVSQPPVRVGKPESPKSRSRSNFEMKDATPKKQKQCNCKHSKCLKLYCECFASGIYCEGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNMEEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMAYIQQAANAAITGAIGSSGYSSPPVSKKRKGQELLFGPTAKDPSVGRLGQFQQVNHVKGPAPSSSSSPIPGARVGSAALGPSKFTYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKILMEKNTEDQMETSVASSTQEQLPSGKEADVEKAMADDCSSANQTDKISPDNSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPNGSMAHACNTSLHSPYGQGVTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELQNQKDSINNGTGNPGTETVHHQGTTSNGVAKAVVPPVATSMNLVTSAALIPSNHVPENGESKPKIEKETLKDSRQNDVQ 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g2262 693 ProSiteProfiles CRC domain profile. 204 328 IPR005172 -
Glsi01g2262 693 PANTHER TESMIN/TSO1-RELATED 141 601 IPR028307 -
Glsi01g2262 693 SMART CXC_2 288 329 IPR033467 -
Glsi01g2262 693 SMART CXC_2 203 243 IPR033467 -
Glsi01g2262 693 MobiDBLite consensus disorder prediction 470 536 - -
Glsi01g2262 693 MobiDBLite consensus disorder prediction 673 693 - -
Glsi01g2262 693 MobiDBLite consensus disorder prediction 503 521 - -
Glsi01g2262 693 Coils Coil 238 258 - -
Glsi01g2262 693 MobiDBLite consensus disorder prediction 170 198 - -
Glsi01g2262 693 MobiDBLite consensus disorder prediction 618 641 - -
Glsi01g2262 693 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 291 325 IPR005172 -
Glsi01g2262 693 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 240 IPR005172 -
Glsi01g2262 693 MobiDBLite consensus disorder prediction 665 693 - -
Glsi01g2262 693 MobiDBLite consensus disorder prediction 473 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g2262 Glsi-ChrGlsi01 85463135 85473737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g2262 86 615 CPP Transcription Factor Family AT4G29000 59.025 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Glsi01g2262 TCR 3.8e-12 No_clan